Strain Fitness in Pseudomonas putida KT2440 around PP_3219

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
3,652,544	+		PP_3218	0.33	+0.3
3,652,544	+		PP_3218	0.33	+0.1
3,652,544	+				+1.9
3,652,550	+				-0.8
3,652,551	-		PP_3218	0.33	-0.2
3,652,562	+		PP_3218	0.34	-0.4
3,652,859	+		PP_3218	0.56	+0.6
3,652,918	-		PP_3218	0.61	+0.8
3,652,937	+		PP_3218	0.62	-0.3
3,652,937	+		PP_3218	0.62	+0.6
3,652,938	-		PP_3218	0.62	-0.4
3,652,982	+		PP_3218	0.66	-0.7
3,653,060	+		PP_3218	0.72	+0.1
3,653,060	+		PP_3218	0.72	-0.2
3,653,199	+		PP_3218	0.82	-1.5
3,653,288	-		PP_3218	0.89	-1.1
3,653,288	-		PP_3218	0.89	+2.4
3,653,291	+		PP_3218	0.89	-1.2
3,653,291	+		PP_3218	0.89	-1.8
3,653,291	+		PP_3218	0.89	-2.5
3,653,291	+		PP_3218	0.89	-2.5
3,653,291	+		PP_3218	0.89	+0.3
3,653,291	+		PP_3218	0.89	-0.2
3,653,292	-		PP_3218	0.89	-1.6
3,653,292	-		PP_3218	0.89	-0.6
3,653,292	-		PP_3218	0.89	+1.6
3,653,337	+				+1.6
3,653,364	-				+0.2
3,653,364	-				-1.2
3,653,375	+				-0.4
3,653,375	+				-2.7
3,653,432	+				-0.2
3,653,433	-				-2.1
3,653,571	+				+1.2
3,653,608	+				-0.4
3,653,671	+		PP_3219	0.13	-1.8
3,653,672	-		PP_3219	0.13	-0.3
3,653,674	+		PP_3219	0.13	-1.9
3,653,675	-		PP_3219	0.13	-0.1
3,653,729	+		PP_3219	0.18	-2.1
3,653,730	-		PP_3219	0.18	+0.8
3,653,876	+		PP_3219	0.31	-1.3
3,653,877	-		PP_3219	0.31	+1.2
3,653,877	-		PP_3219	0.31	-0.5
3,654,061	+		PP_3219	0.48	-1.6
3,654,062	-		PP_3219	0.48	-2.6
3,654,062	-		PP_3219	0.48	+0.1
3,654,090	+		PP_3219	0.51	+2.0
3,654,118	+		PP_3219	0.53	+1.3
3,654,218	+		PP_3219	0.62	+2.3
3,654,235	+		PP_3219	0.64	-1.6
3,654,246	-		PP_3219	0.65	-2.3
3,654,246	-		PP_3219	0.65	-0.9
3,654,246	-		PP_3219	0.65	-0.8
3,654,449	-		PP_3219	0.83	-0.3
3,654,482	+		PP_3219	0.86	-0.9
3,654,517	+		PP_3219	0.89	-2.0
3,654,695	-				-0.9
3,654,707	+				+0.6
3,654,708	-				-2.1
3,654,708	-				+0.6
3,654,774	+				+1.2
3,654,838	-				-1.4
3,654,902	+				-0.7
3,654,902	+				-2.2
3,654,963	+		PP_3220	0.12	+0.8
3,654,963	+		PP_3220	0.12	-1.9
3,654,964	-		PP_3220	0.12	+1.2
3,654,964	-		PP_3220	0.12	+1.0
3,654,964	-		PP_3220	0.12	-2.1
3,655,197	-		PP_3220	0.26	-0.2
3,655,341	+		PP_3220	0.35	-2.0
3,655,503	+		PP_3220	0.45	+0.5
3,655,503	+		PP_3220	0.45	-2.2
3,655,503	+				+1.3
3,655,503	+		PP_3220	0.45	-0.5
3,655,504	-		PP_3220	0.45	-0.2
3,655,504	-		PP_3220	0.45	+1.2