Strain Fitness in Pseudomonas putida KT2440 around PP_3176

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
3,599,036	-		PP_3175	0.56	-0.7
3,599,123	+		PP_3175	0.62	-1.3
3,599,123	+		PP_3175	0.62	+1.4
3,599,443	-		PP_3175	0.83	+0.1
3,599,543	+		PP_3175	0.89	+0.8
3,599,543	+		PP_3175	0.89	-0.2
3,599,544	-		PP_3175	0.89	+1.4
3,599,589	+				+0.9
3,599,589	+				-0.7
3,599,590	-				+0.2
3,599,590	-				+1.0
3,599,590	-				-1.2
3,599,597	+				+0.2
3,599,597	+				+0.4
3,599,695	-				+0.5
3,599,829	-				-2.6
3,599,936	+				-2.4
3,600,009	+		PP_3176	0.11	-0.3
3,600,038	+		PP_3176	0.13	-1.9
3,600,290	+		PP_3176	0.32	+1.3
3,600,291	-		PP_3176	0.32	+1.1
3,600,307	-				-0.9
3,600,387	+		PP_3176	0.39	-0.5
3,600,588	-		PP_3176	0.54	+0.8
3,600,783	+		PP_3176	0.69	+1.8
3,600,784	-		PP_3176	0.69	+0.7
3,600,843	+		PP_3176	0.74	-2.6
3,600,844	-		PP_3176	0.74	+1.3
3,600,971	+		PP_3176	0.83	-0.6
3,600,971	+		PP_3176	0.83	-0.7
3,600,972	-		PP_3176	0.83	+1.8
3,600,972	-		PP_3176	0.83	+2.1
3,600,972	-		PP_3176	0.83	-2.4
3,600,975	+		PP_3176	0.84	+0.0
3,600,975	+		PP_3176	0.84	+1.3
3,600,975	+		PP_3176	0.84	+1.8
3,600,976	-		PP_3176	0.84	+1.9
3,601,080	+				-0.1
3,601,092	+				+0.5
3,601,137	+				-2.0
3,601,211	+				+1.0
3,601,343	-				-0.4
3,601,343	-				-1.8
3,601,343	-				+1.8
3,601,659	+		PP_3177	0.32	+0.9
3,601,659	+		PP_3177	0.32	+0.0
3,601,660	-		PP_3177	0.32	+0.1
3,601,660	-		PP_3177	0.32	-1.1
3,601,712	-		PP_3177	0.37	-1.6
3,601,782	-		PP_3177	0.43	+0.6
3,601,834	+				+1.6
3,601,844	-		PP_3177	0.48	+1.0
3,602,048	+		PP_3177	0.65	-1.1
3,602,048	+		PP_3177	0.65	+3.3
3,602,048	+		PP_3177	0.65	-0.2
3,602,074	+		PP_3177	0.68	-2.8
3,602,126	-		PP_3177	0.72	-0.2
3,602,126	-		PP_3177	0.72	-2.0