Strain Fitness in Pseudomonas putida KT2440 around PP_3157

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
3,576,157	+		PP_3156	0.63	-0.3
3,576,158	-		PP_3156	0.63	-1.2
3,576,158	-		PP_3156	0.63	-0.4
3,576,205	+		PP_3156	0.68	-0.2
3,576,205	+		PP_3156	0.68	-3.0
3,576,206	-		PP_3156	0.68	+0.5
3,576,248	-		PP_3156	0.73	+1.4
3,576,248	-		PP_3156	0.73	-0.8
3,576,248	-		PP_3156	0.73	+1.2
3,576,381	+		PP_3156	0.88	+1.4
3,576,438	+				+0.5
3,576,541	-				-2.4
3,576,541	-				+1.3
3,576,555	+				-0.9
3,576,577	+				+0.5
3,576,578	-				+1.3
3,576,699	+		PP_3157	0.11	+1.2
3,577,174	-		PP_3157	0.71	-1.9
3,577,188	+		PP_3157	0.72	-1.7
3,577,188	+		PP_3157	0.72	+0.7
3,577,189	-		PP_3157	0.72	+0.1
3,577,189	-		PP_3157	0.72	+0.0
3,577,189	-		PP_3157	0.72	-2.2
3,577,189	-		PP_3157	0.72	-0.3
3,577,194	+		PP_3157	0.73	+0.1
3,577,194	+		PP_3157	0.73	-1.4
3,577,195	-		PP_3157	0.73	-2.1
3,577,195	-		PP_3157	0.73	-2.3
3,577,251	+		PP_3157	0.80	-2.0
3,577,251	+		PP_3157	0.80	+1.1
3,577,252	-		PP_3157	0.80	-0.4
3,577,258	+		PP_3157	0.81	-1.4
3,577,258	+		PP_3157	0.81	+0.3
3,577,259	-		PP_3157	0.81	+1.3
3,577,259	-		PP_3157	0.81	+0.2
3,577,259	-		PP_3157	0.81	-1.5
3,577,533	+				-1.5
3,577,533	+				+1.5
3,577,534	-				+0.6
3,577,534	-				-0.1
3,577,534	-				+0.5
3,577,534	-				-0.1
3,577,604	+				-1.2
3,577,630	-				-2.5
3,577,785	-		PP_3158	0.27	+1.8
3,577,805	+		PP_3158	0.30	+0.9
3,577,805	+		PP_3158	0.30	-3.1
3,577,943	+		PP_3158	0.48	-2.0
3,577,943	+		PP_3158	0.48	-0.2
3,577,991	+		PP_3158	0.55	-0.8
3,578,043	-		PP_3158	0.62	+2.4
3,578,043	-		PP_3158	0.62	-0.4
3,578,043	-		PP_3158	0.62	-1.5
3,578,269	-				+2.9
3,578,322	-				+1.1
3,578,360	-				+1.1