Strain Fitness in Pseudomonas putida KT2440 around PP_3102

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
3,503,427	-				+2.0
3,503,454	-				+1.3
3,503,454	-				-1.1
3,503,586	+				+1.3
3,503,608	-				-2.4
3,503,701	+				-1.3
3,503,762	-				-2.0
3,503,803	-				+1.9
3,503,980	+				-0.7
3,504,010	+				-1.2
3,504,090	+		PP_5573	0.46	+2.6
3,504,207	+				-2.2
3,504,208	-				-0.5
3,504,208	-				+0.8
3,504,214	+				-1.4
3,504,215	-				+0.2
3,504,216	+				-0.2
3,504,217	-				+0.8
3,504,217	-				-1.3
3,504,320	+		PP_3102	0.15	-1.5
3,504,321	-		PP_3102	0.15	-2.5
3,504,325	-		PP_3102	0.17	-2.6
3,504,422	-		PP_3102	0.49	+0.8
3,504,456	+		PP_3102	0.61	-2.8
3,504,470	+		PP_3102	0.66	-1.6
3,504,473	+		PP_3102	0.67	-2.6
3,504,484	-		PP_3102	0.70	+2.1
3,504,493	-		PP_3102	0.73	-1.3
3,504,542	+				+0.1
3,504,542	+				+0.6
3,504,542	+				-0.3
3,504,542	+				-1.5
3,504,543	-				+1.6
3,504,543	-				-0.3
3,504,543	-				+0.3
3,504,571	+				-1.0
3,504,571	+				-0.2
3,504,571	+				+0.3
3,504,587	-				-0.7
3,504,647	+				+2.0
3,504,647	+				+1.9
3,504,648	-				-0.6
3,504,694	-		PP_3103	0.12	-1.2
3,504,694	-		PP_3103	0.12	+2.9
3,504,729	-		PP_3103	0.15	+0.2
3,504,828	-		PP_3103	0.24	-3.4
3,504,932	+		PP_3103	0.34	-1.0
3,504,933	-		PP_3103	0.34	-2.7
3,504,933	-		PP_3103	0.34	+0.5
3,504,941	+		PP_3103	0.35	-0.9
3,504,941	+		PP_3103	0.35	+0.4
3,504,954	+		PP_3103	0.36	-1.4
3,504,955	-		PP_3103	0.36	-0.4
3,504,956	+		PP_3103	0.36	-0.7
3,504,957	-		PP_3103	0.36	+1.4
3,504,957	-		PP_3103	0.36	+0.2
3,504,979	+		PP_3103	0.38	-2.3
3,505,003	+		PP_3103	0.41	+0.9
3,505,003	+		PP_3103	0.41	+0.9
3,505,003	+		PP_3103	0.41	+0.6
3,505,004	-		PP_3103	0.41	+0.1
3,505,004	-		PP_3103	0.41	-2.5
3,505,332	+		PP_3103	0.71	+0.3
3,505,333	-		PP_3103	0.71	-0.1
3,505,337	+		PP_3103	0.72	-2.4
3,505,337	+		PP_3103	0.72	+0.1
3,505,337	+		PP_3103	0.72	+1.9
3,505,338	-		PP_3103	0.72	+0.4
3,505,338	-		PP_3103	0.72	+0.8
3,505,338	-		PP_3103	0.72	+1.8
3,505,357	+		PP_3103	0.73	-3.5
3,505,542	-				+0.8