Strain Fitness in Pseudomonas putida KT2440 around PP_2918

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
3,315,994	-				-0.2
3,316,106	-				-1.2
3,316,197	+				-1.2
3,316,216	+				+0.0
3,316,217	-				+1.8
3,316,280	+		PP_2916	0.18	+0.2
3,316,281	-		PP_2916	0.18	+1.9
3,316,281	-		PP_2916	0.18	+0.7
3,316,403	+		PP_2916	0.37	+1.0
3,316,403	+		PP_2916	0.37	-0.5
3,316,403	+		PP_2916	0.37	+1.6
3,316,404	-		PP_2916	0.37	+0.2
3,316,660	-		PP_2916	0.78	-0.2
3,316,746	-				+0.2
3,316,793	+				+0.6
3,316,794	-				-1.1
3,316,794	-				+0.8
3,316,794	-				+1.6
3,316,838	+				-1.4
3,316,838	+				-0.3
3,316,839	-				+1.6
3,316,855	-				-2.1
3,317,344	-		PP_2918	0.18	-1.1
3,317,541	+		PP_2918	0.28	-1.5
3,317,541	+		PP_2918	0.28	+1.2
3,317,542	-		PP_2918	0.28	+0.4
3,317,542	-		PP_2918	0.28	+0.8
3,317,542	-		PP_2918	0.28	+4.1
3,317,683	-		PP_2918	0.34	+4.5
3,317,683	-		PP_2918	0.34	-0.2
3,317,712	+		PP_2918	0.36	+0.0
3,317,713	-		PP_2918	0.36	+1.1
3,317,713	-		PP_2918	0.36	-1.9
3,317,713	-		PP_2918	0.36	+1.8
3,317,769	+		PP_2918	0.39	-3.0
3,317,770	-		PP_2918	0.39	-2.2
3,317,770	-		PP_2918	0.39	-0.2
3,317,770	-		PP_2918	0.39	+1.0
3,317,770	-		PP_2918	0.39	+0.2
3,317,775	+		PP_2918	0.39	-1.0
3,317,776	-		PP_2918	0.39	-0.2
3,317,776	-		PP_2918	0.39	+0.2
3,317,779	+		PP_2918	0.39	+3.3
3,317,779	+		PP_2918	0.39	+0.6
3,317,780	-		PP_2918	0.39	+0.8
3,317,780	-		PP_2918	0.39	+0.1
3,317,780	-		PP_2918	0.39	-0.4
3,317,780	-		PP_2918	0.39	-0.9
3,317,964	+		PP_2918	0.48	+0.4
3,317,965	-		PP_2918	0.48	-0.4
3,317,965	-		PP_2918	0.48	-0.1
3,318,236	-		PP_2918	0.61	+1.8
3,318,277	-		PP_2918	0.63	-2.1
3,318,285	+		PP_2918	0.64	+0.4
3,318,374	+		PP_2918	0.68	-0.4
3,318,399	+		PP_2918	0.69	+0.5
3,318,400	-		PP_2918	0.69	+3.2
3,318,400	-		PP_2918	0.69	+0.5
3,318,513	+		PP_2918	0.75	-0.6
3,318,514	-		PP_2918	0.75	-0.5
3,318,660	+		PP_2918	0.82	-0.8
3,318,660	+		PP_2918	0.82	+0.3
3,318,774	-		PP_2918	0.87	-0.6
3,318,921	+				-0.1
3,318,921	+				-1.6
3,318,954	+				-1.2
3,319,014	+				+1.5
3,319,014	+				+2.3
3,319,015	-				-2.0
3,319,015	-				-0.4
3,319,015	-				-1.6
3,319,073	+				+0.2
3,319,074	-				-0.2
3,319,074	-				+0.7
3,319,074	-				-1.1
3,319,155	+				-0.4
3,319,278	-				-1.0
3,319,492	+		PP_2919	0.29	+1.1
3,319,493	-		PP_2919	0.29	-0.2
3,319,523	+		PP_2919	0.32	-0.0
3,319,524	-		PP_2919	0.32	-0.5
3,319,564	+		PP_2919	0.37	-1.5
3,319,565	-		PP_2919	0.37	-0.8
3,319,769	+		PP_2919	0.59	-0.1
3,319,770	-		PP_2919	0.59	-1.3
3,319,770	-		PP_2919	0.59	-0.5
3,319,770	-		PP_2919	0.59	-1.8
3,319,770	-		PP_2919	0.59	-0.0
3,319,847	+		PP_2919	0.67	+0.2
3,319,847	+		PP_2919	0.67	-0.0
3,319,934	+		PP_2919	0.77	-0.6
3,319,934	+		PP_2919	0.77	-1.0
3,319,935	-		PP_2919	0.77	-1.5
3,319,935	-		PP_2919	0.77	+0.7