Strain Fitness in Pseudomonas putida KT2440 around PP_2755

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
3,138,507	-		PP_2754	0.48	-0.3
3,138,532	-		PP_2754	0.50	-2.2
3,138,532	-		PP_2754	0.50	-0.0
3,138,601	+		PP_2754	0.55	+0.3
3,138,602	-		PP_2754	0.55	-0.1
3,138,602	-		PP_2754	0.55	+0.6
3,138,678	+		PP_2754	0.60	+2.0
3,138,786	+		PP_2754	0.68	-0.8
3,138,786	+		PP_2754	0.68	-0.6
3,138,786	+		PP_2754	0.68	-0.3
3,138,787	-		PP_2754	0.69	-1.7
3,138,834	+		PP_2754	0.72	+1.4
3,138,835	-		PP_2754	0.72	+0.6
3,138,835	-		PP_2754	0.72	+0.2
3,138,915	+		PP_2754	0.78	-3.0
3,138,915	+		PP_2754	0.78	+0.5
3,138,916	-		PP_2754	0.78	+1.3
3,138,916	-		PP_2754	0.78	+1.4
3,139,008	+		PP_2754	0.85	+1.0
3,139,008	+		PP_2754	0.85	+2.2
3,139,014	+		PP_2754	0.85	-1.4
3,139,015	-		PP_2754	0.85	+0.8
3,139,069	-		PP_2754	0.89	+1.8
3,139,388	+				+2.8
3,139,389	-				-0.7
3,139,700	+		PP_2755	0.20	-0.3
3,139,705	+		PP_2755	0.21	+0.2
3,139,705	+		PP_2755	0.21	-1.4
3,139,705	+		PP_2755	0.21	-2.1
3,139,705	+		PP_2755	0.21	-2.4
3,139,705	+		PP_2755	0.21	-0.5
3,139,705	+		PP_2755	0.21	-1.8
3,139,705	+		PP_2755	0.21	+0.9
3,139,705	+		PP_2755	0.21	-0.1
3,139,706	-		PP_2755	0.21	-0.9
3,139,706	-		PP_2755	0.21	-0.2
3,139,706	-		PP_2755	0.21	-0.2
3,139,706	-				+1.4
3,139,706	-		PP_2755	0.21	-0.1
3,139,706	-		PP_2755	0.21	+0.8
3,139,706	-		PP_2755	0.21	+0.5
3,139,837	+		PP_2755	0.31	-1.3
3,140,106	+		PP_2755	0.53	-1.0
3,140,106	+		PP_2755	0.53	-0.1
3,140,107	-		PP_2755	0.53	-0.2
3,140,107	-		PP_2755	0.53	-0.1
3,140,179	+		PP_2755	0.59	-0.9
3,140,507	+		PP_2755	0.85	-2.1
3,140,842	-		PP_2756	0.36	+0.3
3,141,040	+		PP_2756	0.88	-2.3
3,141,041	-		PP_2756	0.88	+2.2
3,141,222	+		PP_2757	0.14	-0.6
3,141,222	+		PP_2757	0.14	-0.4
3,141,222	+		PP_2757	0.14	+1.8
3,141,364	+		PP_2757	0.29	+2.0
3,141,573	+		PP_2757	0.50	+2.2
3,141,573	+		PP_2757	0.50	+1.4
3,141,574	-		PP_2757	0.50	+2.2
3,141,620	-		PP_2757	0.55	-1.3
3,141,620	-		PP_2757	0.55	-1.9