Strain Fitness in Pseudomonas putida KT2440 around PP_2695

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
3,086,124	+		PP_2694	0.69	-0.2
3,086,134	+		PP_2694	0.70	+1.0
3,086,228	+		PP_2694	0.77	-1.9
3,086,232	-		PP_2694	0.77	+0.3
3,086,495	+				-1.6
3,086,495	+				-0.7
3,086,496	-				-2.2
3,086,496	-				-0.3
3,086,496	-				-0.5
3,086,496	-				+1.8
3,086,496	-				+1.1
3,086,496	-				+1.7
3,086,496	-				-0.7
3,086,540	+				+1.4
3,086,540	+				+0.3
3,086,540	+				-3.2
3,086,541	-				-0.8
3,086,541	-				+0.7
3,086,549	+				+0.2
3,086,550	-				+0.7
3,086,550	-				-1.3
3,086,656	+				-0.1
3,086,701	+				-2.7
3,086,836	+		PP_2695	0.21	-2.1
3,087,374	+		PP_2695	0.80	-1.0
3,087,374	+		PP_2695	0.80	-0.4
3,087,375	-		PP_2695	0.81	+0.9
3,087,375	-		PP_2695	0.81	+0.1
3,087,384	+		PP_2695	0.82	-2.2
3,087,586	-				-1.0
3,087,700	+				-2.3
3,087,701	-				+1.1
3,087,737	-		PP_2696	0.13	-0.6
3,087,737	-		PP_2696	0.13	-0.0
3,087,781	-		PP_2696	0.18	-1.4
3,087,781	-		PP_2696	0.18	-0.0
3,087,781	-		PP_2696	0.18	+1.4
3,087,784	+		PP_2696	0.18	-0.3
3,087,799	+		PP_2696	0.20	+0.2
3,087,800	-		PP_2696	0.20	+0.1
3,087,884	+		PP_2696	0.29	+0.4
3,087,884	+		PP_2696	0.29	-2.2
3,087,885	-		PP_2696	0.29	-2.7
3,087,885	-		PP_2696	0.29	-0.7
3,087,888	+		PP_2696	0.29	+0.7
3,087,888	+		PP_2696	0.29	-0.2
3,087,889	-		PP_2696	0.29	+1.0
3,087,962	-		PP_2696	0.37	+1.7
3,088,072	+		PP_2696	0.49	+1.2
3,088,072	+		PP_2696	0.49	+1.4
3,088,072	+		PP_2696	0.49	+1.8
3,088,073	-		PP_2696	0.49	-2.0
3,088,073	-		PP_2696	0.49	+0.8
3,088,073	-		PP_2696	0.49	+0.5
3,088,235	-		PP_2696	0.67	-0.5
3,088,235	-		PP_2696	0.67	+0.7
3,088,310	+		PP_2696	0.75	-0.5
3,088,533	+				+1.4