Strain Fitness in Pseudomonas putida KT2440 around PP_2633

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
3,011,575	-		PP_2632	0.39	-1.7
3,011,575	-		PP_2632	0.39	-0.5
3,011,687	+		PP_2632	0.46	-0.1
3,012,024	-				+0.5
3,012,055	+		PP_2632	0.69	-1.6
3,012,093	-		PP_2632	0.71	+0.7
3,012,093	-		PP_2632	0.71	+2.4
3,012,168	+		PP_2632	0.76	+0.2
3,012,168	+		PP_2632	0.76	+3.6
3,012,260	-		PP_2632	0.82	+0.3
3,012,344	+		PP_2632	0.87	+0.5
3,012,345	-		PP_2632	0.87	-1.5
3,012,377	+		PP_2632	0.89	-1.7
3,012,582	+		PP_2633	0.15	-0.3
3,012,634	+		PP_2633	0.38	-3.3
3,012,982	-		PP_2634	0.31	-0.2
3,013,113	+		PP_2634	0.49	-0.5
3,013,113	+		PP_2634	0.49	+1.2
3,013,113	+		PP_2634	0.49	+0.2
3,013,168	+		PP_2634	0.57	-0.2
3,013,260	+		PP_2634	0.70	-0.5
3,013,377	+		PP_2634	0.86	-0.1
3,013,378	-		PP_2634	0.87	-0.0
3,013,398	+		PP_2634	0.89	-0.2
3,013,495	+				+0.7
3,013,496	-				-1.7
3,013,496	-				-3.3
3,013,496	-				+1.4
3,013,726	+				-1.0