Strain Fitness in Pseudomonas putida KT2440 around PP_2583

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
2,948,284	-		PP_2581	0.48	-2.0
2,948,388	+		PP_2581	0.78	+1.2
2,948,431	-				-1.3
2,948,506	+				-1.9
2,948,507	-				-0.7
2,948,557	+		PP_2582	0.11	-2.3
2,948,745	-		PP_2582	0.43	+1.9
2,948,897	+		PP_2582	0.69	-0.1
2,948,897	+		PP_2582	0.69	-0.3
2,948,898	-		PP_2582	0.69	-3.2
2,948,952	-		PP_2582	0.78	-0.7
2,949,070	+				-0.7
2,949,100	-				+0.2
2,949,100	-				+2.4
2,949,203	+				-2.2
2,949,204	-				-1.9
2,949,204	-				-0.6
2,949,221	+				+1.9
2,949,221	+				-1.3
2,949,222	-				-1.1
2,949,236	+		PP_2583	0.11	-0.1
2,949,237	-		PP_2583	0.11	-2.0
2,949,295	+		PP_2583	0.21	-1.8
2,949,296	-		PP_2583	0.22	-1.1
2,949,296	-		PP_2583	0.22	-0.1
2,949,316	+		PP_2583	0.25	-2.1
2,949,317	-		PP_2583	0.25	-1.5
2,949,361	-		PP_2583	0.33	+1.6
2,949,528	-		PP_2583	0.63	+1.5
2,949,641	+		PP_2583	0.83	-2.8
2,949,642	-		PP_2583	0.83	-3.9
2,949,642	-		PP_2583	0.83	-1.3
2,949,642	-		PP_2583	0.83	+0.8
2,949,751	+				+0.2
2,949,751	+				+0.2
2,949,751	+				+3.5
2,949,752	-				-1.5
2,949,752	-				+2.7
2,949,752	-				-1.1
2,949,964	+				-1.5
2,949,964	+				+0.3
2,949,965	-				-0.5
2,949,965	-				-0.7
2,950,091	-		PP_2584	0.18	-2.2
2,950,091	-		PP_2584	0.18	-1.0
2,950,103	-		PP_2584	0.19	+0.6
2,950,409	+		PP_2584	0.41	-2.6
2,950,409	+		PP_2584	0.41	-0.5
2,950,409	+		PP_2584	0.41	+0.8
2,950,410	-		PP_2584	0.41	-0.5
2,950,410	-		PP_2584	0.41	+1.5
2,950,479	+		PP_2584	0.46	+0.1
2,950,480	-				-0.8