Strain Fitness in Pseudomonas putida KT2440 around PP_2555

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
2,901,933	-		PP_2554	0.53	+0.5
2,901,933	-		PP_2554	0.53	-1.0
2,901,961	-		PP_2554	0.55	+0.4
2,902,146	+		PP_2554	0.64	+1.5
2,902,146	+		PP_2554	0.64	-1.6
2,902,146	+		PP_2554	0.64	-1.2
2,902,147	-		PP_2554	0.64	+0.4
2,902,147	-		PP_2554	0.64	+0.3
2,902,296	+		PP_2554	0.72	-1.3
2,902,296	+		PP_2554	0.72	-0.7
2,902,297	-		PP_2554	0.72	+1.9
2,902,297	-		PP_2554	0.72	-0.5
2,902,566	+		PP_2554	0.86	-0.4
2,902,566	+				-0.2
2,902,569	+		PP_2554	0.86	+0.6
2,902,569	+		PP_2554	0.86	-1.0
2,902,570	-		PP_2554	0.87	+0.6
2,902,570	-		PP_2554	0.87	+0.3
2,902,570	-		PP_2554	0.87	-1.1
2,902,626	+		PP_2554	0.89	+0.5
2,902,626	+		PP_2554	0.89	+2.0
2,902,626	+		PP_2554	0.89	+0.2
2,902,629	+		PP_2554	0.90	+0.9
2,902,629	+		PP_2554	0.90	-0.4
2,902,630	-		PP_2554	0.90	+2.1
2,902,641	+				+0.1
2,902,680	+				-0.7
2,902,682	+				-1.7
2,902,682	+				+1.2
2,902,824	+				-2.2
2,902,825	-				+1.2
2,903,025	+		PP_2555	0.19	+0.2
2,903,026	-		PP_2555	0.19	-2.0
2,903,161	+		PP_2555	0.39	+1.0
2,903,162	-		PP_2555	0.39	-0.0
2,903,229	+		PP_2555	0.49	-2.1
2,903,229	+		PP_2555	0.49	-1.7
2,903,230	-		PP_2555	0.49	-0.5
2,903,271	+		PP_2555	0.55	+1.1
2,903,630	-				+0.3
2,903,645	+				+0.5
2,903,954	+		PP_2556	0.28	+0.5
2,903,954	+		PP_2556	0.28	-0.5
2,903,955	-		PP_2556	0.28	-0.8
2,904,059	+		PP_2556	0.36	+0.9
2,904,059	+		PP_2556	0.36	+1.3
2,904,080	+		PP_2556	0.37	+1.2
2,904,081	-				+1.0
2,904,081	-		PP_2556	0.37	+0.6
2,904,086	+		PP_2556	0.38	-1.3
2,904,087	-		PP_2556	0.38	-0.5
2,904,378	-				+2.1
2,904,466	+		PP_2556	0.66	+0.2
2,904,467	-		PP_2556	0.66	-0.8