Strain Fitness in Pseudomonas putida KT2440 around PP_2424

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
2,770,301	+				+0.5
2,770,301	+				-0.2
2,770,353	-		PP_2423	0.12	+1.0
2,770,470	-		PP_2423	0.25	+1.7
2,770,535	+		PP_2423	0.32	-1.6
2,770,535	+		PP_2423	0.32	-1.1
2,770,536	-		PP_2423	0.33	+1.3
2,770,536	-		PP_2423	0.33	+0.0
2,770,544	+		PP_2423	0.33	-0.4
2,770,611	-		PP_2423	0.41	+3.4
2,770,611	-		PP_2423	0.41	-0.5
2,770,650	-		PP_2423	0.45	-0.5
2,770,667	+		PP_2423	0.47	-1.5
2,770,668	-		PP_2423	0.47	-1.2
2,770,814	+		PP_2423	0.63	-1.9
2,770,814	+		PP_2423	0.63	+1.2
2,770,815	-		PP_2423	0.64	-0.2
2,770,865	+		PP_2423	0.69	-0.0
2,770,865	+		PP_2423	0.69	-0.2
2,770,865	+		PP_2423	0.69	-1.6
2,770,865	+		PP_2423	0.69	-0.1
2,770,866	-		PP_2423	0.69	+0.6
2,770,891	+		PP_2423	0.72	+2.0
2,770,980	-		PP_2423	0.82	+2.6
2,770,980	-		PP_2423	0.82	-0.4
2,771,009	+		PP_2423	0.85	-1.2
2,771,009	+		PP_2423	0.85	+0.6
2,771,009	+		PP_2423	0.85	-1.1
2,771,099	+				-0.7
2,771,100	-				-1.7
2,771,100	-				+1.1
2,771,100	-				-1.6
2,771,121	+				+0.2
2,771,121	+				+0.4
2,771,122	-				-1.1
2,771,122	-				-0.8
2,771,125	+				+1.8
2,771,125	+				+0.5
2,771,125	+				+1.0
2,771,126	-				-0.5
2,771,150	+				+1.1
2,771,150	+				-1.4
2,771,150	+				+0.3
2,771,150	+				+0.3
2,771,150	+				-2.5
2,771,150	+				-0.5
2,771,151	-				-2.5
2,771,203	-				+1.1
2,771,223	+				-1.8
2,771,223	+				-0.9
2,771,223	+				-0.1
2,771,223	+				-0.9
2,771,224	-				-2.2
2,771,224	-				+0.2
2,771,224	-				+1.1
2,771,230	-				-0.3
2,771,255	+				-2.7
2,771,255	+				-0.1
2,771,256	-				+1.9
2,771,256	-				+0.6
2,771,256	-				+0.3
2,771,256	-				-1.0
2,771,256	-				-1.3
2,771,256	-				+0.8
2,771,258	+				+0.6
2,771,258	+				+0.6
2,771,258	+				-0.4
2,771,258	+				+0.2
2,771,300	+				-0.6
2,771,300	+				+1.5
2,771,300	+				-2.2
2,771,300	+				+0.8
2,771,312	+				+2.2
2,771,312	+				-0.9
2,771,314	+				+0.3
2,771,314	+				-1.7
2,771,314	+				-1.5
2,771,315	-				+3.9
2,771,315	-				+1.0
2,771,315	-				-0.3
2,771,315	-				-0.8
2,771,315	-				-0.5
2,771,315	-				+1.1
2,771,315	-				-0.8
2,771,315	-				-1.7
2,771,476	+		PP_2424	0.32	-0.4
2,771,476	+		PP_2424	0.32	+0.7
2,771,476	+		PP_2424	0.32	-0.4
2,771,476	+		PP_2424	0.32	-1.2
2,771,476	+		PP_2424	0.32	-1.7
2,771,476	+		PP_2424	0.32	-1.7
2,771,477	-		PP_2424	0.32	-1.3
2,771,477	-		PP_2424	0.32	-0.5
2,771,477	-		PP_2424	0.32	+1.1
2,771,477	-		PP_2424	0.32	-0.6
2,771,637	+		PP_2424	0.62	+0.1
2,771,638	-		PP_2424	0.62	+0.5
2,771,763	+		PP_2424	0.85	+0.5
2,771,790	+		PP_2424	0.90	-1.7
2,771,881	+				-0.7
2,771,881	+				+1.1
2,771,882	-				-1.5
2,771,882	-				+1.7
2,771,912	-				-0.2
2,771,912	-				+0.7
2,771,929	+				+4.4
2,771,930	-				-1.3
2,771,938	+				-1.5
2,771,972	-				-1.4
2,772,001	+		PP_2425	0.10	-0.3
2,772,194	-		PP_2425	0.31	+0.2
2,772,298	+		PP_2425	0.43	+0.4
2,772,331	-		PP_2425	0.46	-0.4
2,772,584	-		PP_2425	0.74	-2.7
2,772,584	-		PP_2425	0.74	+0.0
2,772,598	+		PP_2425	0.76	-1.2
2,772,598	+		PP_2425	0.76	+1.1
2,772,598	+		PP_2425	0.76	-0.1
2,772,691	+		PP_2425	0.86	+1.0
2,772,691	+		PP_2425	0.86	-3.0
2,772,692	-		PP_2425	0.86	+1.3
2,772,692	-		PP_2425	0.86	-2.9
2,772,692	-		PP_2425	0.86	-0.3
2,772,692	-		PP_2425	0.86	+1.9
2,772,692	-		PP_2425	0.86	-0.1