Strain Fitness in Pseudomonas putida KT2440 around PP_2113

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
2,410,829	+		PP_2112	0.77	+2.6
2,410,843	+		PP_2112	0.78	+0.1
2,410,843	+		PP_2112	0.78	+0.6
2,410,843	+		PP_2112	0.78	+0.7
2,410,843	+		PP_2112	0.78	-0.8
2,410,844	-		PP_2112	0.78	-0.3
2,410,844	-		PP_2112	0.78	+2.0
2,410,844	-		PP_2112	0.78	+0.3
2,410,844	-		PP_2112	0.78	+1.9
2,410,844	-		PP_2112	0.78	+1.4
2,410,888	+		PP_2112	0.80	-1.9
2,410,889	-		PP_2112	0.80	+0.6
2,410,979	-		PP_2112	0.83	-0.1
2,410,979	-				+2.1
2,411,055	+		PP_2112	0.86	-0.0
2,411,383	+				-0.7
2,411,383	+				+1.1
2,411,390	-				-0.5
2,411,390	-				+1.1
2,411,480	+				-1.0
2,411,481	-				+0.2
2,411,481	-				-0.3
2,411,510	+				-0.6
2,411,511	-				+0.5
2,411,551	-				+0.9
2,411,560	+				+0.5
2,411,565	+				-0.4
2,411,566	-				+0.2
2,411,618	+				-2.4
2,411,618	+				-0.4
2,411,677	+				-0.2
2,411,895	-		PP_2113	0.21	-2.5
2,411,928	+		PP_2113	0.24	-0.4
2,411,928	+		PP_2113	0.24	+1.8
2,412,130	-		PP_2113	0.43	+1.0
2,412,211	+		PP_2113	0.51	+1.3
2,412,211	+		PP_2113	0.51	-1.3
2,412,335	+		PP_2113	0.62	-3.1
2,412,386	-		PP_2113	0.67	+0.1
2,412,505	+		PP_2113	0.78	-0.2
2,412,591	-		PP_2113	0.86	-2.7
2,412,600	+		PP_2113	0.87	-1.8
2,412,600	+		PP_2113	0.87	-0.6
2,412,601	-		PP_2113	0.87	-1.4
2,412,601	-		PP_2113	0.87	+0.4
2,412,677	+				+1.0