Strain Fitness in Pseudomonas putida KT2440 around PP_2070

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
2,355,189	+		PP_2069	0.42	+0.5
2,355,427	+		PP_2069	0.59	-0.4
2,355,445	+		PP_2069	0.60	-0.3
2,355,446	-		PP_2069	0.60	+1.4
2,355,489	+		PP_2069	0.63	-0.9
2,355,490	-		PP_2069	0.63	+0.8
2,355,543	+		PP_2069	0.67	-1.5
2,355,569	-		PP_2069	0.69	-2.7
2,355,661	+		PP_2069	0.75	+1.3
2,355,662	-		PP_2069	0.75	+0.7
2,355,662	-		PP_2069	0.75	+0.7
2,355,662	-		PP_2069	0.75	+1.7
2,355,662	-		PP_2069	0.75	+1.2
2,355,665	+		PP_2069	0.76	+1.2
2,355,666	-		PP_2069	0.76	+1.1
2,355,686	+		PP_2069	0.77	-0.8
2,355,789	+		PP_2069	0.84	+0.7
2,355,790	-		PP_2069	0.84	-1.5
2,355,790	-		PP_2069	0.84	-0.7
2,355,817	+		PP_2069	0.86	+1.0
2,355,817	+		PP_2069	0.86	-3.9
2,355,817	+		PP_2069	0.86	-0.8
2,355,818	-		PP_2069	0.86	-0.1
2,355,818	-		PP_2069	0.86	+0.6
2,355,898	-				+1.3
2,355,999	+				+1.1
2,355,999	+				+1.1
2,356,000	-				-2.0
2,356,000	-				+1.1
2,356,115	+				+0.5
2,356,116	-				-0.9
2,356,128	+				+0.2
2,356,183	-		PP_2070	0.10	-0.8
2,356,296	-		PP_2070	0.26	+1.0
2,356,850	+				+0.1
2,357,127	+		PP_2071	0.35	-0.8
2,357,127	+		PP_2071	0.35	+0.7
2,357,127	+		PP_2071	0.35	+1.5
2,357,127	+		PP_2071	0.35	+1.8
2,357,128	-		PP_2071	0.35	+2.5
2,357,128	-		PP_2071	0.35	+1.6
2,357,128	-		PP_2071	0.35	+0.3
2,357,128	-		PP_2071	0.35	-0.0
2,357,235	-		PP_2071	0.63	+4.4
2,357,269	-		PP_2071	0.72	+0.9
2,357,315	+		PP_2071	0.84	+1.4
2,357,409	+				+0.3
2,357,409	+				+1.6
2,357,436	+				-2.3
2,357,437	-				+0.1
2,357,519	+				+0.1
2,357,536	-				-1.1
2,357,682	+		PP_2072	0.24	+1.5
2,357,683	-		PP_2072	0.24	-0.6
2,357,753	+		PP_2072	0.32	-1.0
2,357,753	+		PP_2072	0.32	-0.5
2,357,753	+		PP_2072	0.32	+3.2
2,357,754	-		PP_2072	0.32	+1.1
2,357,809	-		PP_2072	0.39	-1.1
2,357,809	-		PP_2072	0.39	-1.1