Strain Fitness in Pseudomonas putida KT2440 around PP_2067

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
2,350,781	-				+0.7
2,350,875	+				-1.0
2,350,876	-				-0.0
2,350,921	-				-0.5
2,350,972	+				-1.7
2,350,972	+				+0.4
2,351,035	-		PP_2066	0.14	+0.8
2,351,151	+		PP_2066	0.29	+0.6
2,351,152	-		PP_2066	0.29	+0.6
2,351,152	-		PP_2066	0.29	+1.1
2,351,152	-		PP_2066	0.29	-0.1
2,351,152	-		PP_2066	0.29	+1.2
2,351,220	+		PP_2066	0.38	-1.5
2,351,221	-		PP_2066	0.38	+0.1
2,351,235	+		PP_2066	0.40	+0.3
2,351,235	+		PP_2066	0.40	-1.2
2,351,235	+		PP_2066	0.40	-1.0
2,351,235	+		PP_2066	0.40	-0.3
2,351,235	+		PP_2066	0.40	-2.6
2,351,235	+		PP_2066	0.40	+0.7
2,351,236	-		PP_2066	0.40	-0.2
2,351,236	-		PP_2066	0.40	+0.4
2,351,236	-		PP_2066	0.40	-1.6
2,351,236	-		PP_2066	0.40	-0.6
2,351,236	-		PP_2066	0.40	+0.2
2,351,305	-		PP_2066	0.49	+1.1
2,351,305	-		PP_2066	0.49	+1.2
2,351,305	-		PP_2066	0.49	+1.7
2,351,556	+		PP_2066	0.82	-0.7
2,351,557	-		PP_2066	0.82	-0.4
2,351,653	-				+1.5
2,351,668	+				-0.3
2,351,668	+				+0.6
2,351,668	+				+3.0
2,351,669	-				+0.2
2,351,669	-				+0.8
2,351,708	+				+1.6
2,351,708	+				-1.0
2,351,708	+				-0.6
2,351,708	+				-0.2
2,351,820	+				-1.0
2,351,821	-				+1.7
2,351,835	+				+2.1
2,351,835	+				-2.4
2,351,835	+				+1.2
2,351,835	+				+0.9
2,351,835	+				+0.2
2,351,836	-				+0.8
2,351,836	-				-0.2
2,351,847	+				-1.7
2,351,848	-				+0.4
2,351,930	-		PP_2067	0.12	-1.4
2,352,384	+		PP_2067	0.42	-0.5
2,352,384	+		PP_2067	0.42	-0.3
2,352,385	-		PP_2067	0.42	-1.8
2,352,463	-		PP_2067	0.47	+0.9
2,352,754	-				-0.6
2,352,774	+		PP_2067	0.68	+1.1
2,352,775	-		PP_2067	0.68	-0.1
2,352,948	-		PP_2067	0.79	-0.8
2,353,295	+				+2.4
2,353,295	+				-1.0
2,353,295	+				+2.9
2,353,295	+				-1.9
2,353,296	-				+0.3
2,353,320	+				-1.8
2,353,497	+		PP_2068	0.19	+1.8
2,353,497	+		PP_2068	0.19	+3.2
2,353,498	-		PP_2068	0.19	+0.8
2,353,498	-		PP_2068	0.19	+0.3
2,353,498	-		PP_2068	0.19	-1.1
2,353,546	+		PP_2068	0.23	+0.4
2,353,546	+		PP_2068	0.23	+0.0
2,353,547	-		PP_2068	0.23	-0.5
2,353,558	-		PP_2068	0.24	+1.4
2,353,561	+		PP_2068	0.24	+0.4
2,353,561	+		PP_2068	0.24	+0.8
2,353,562	-		PP_2068	0.24	+1.4
2,353,562	-		PP_2068	0.24	-2.5
2,353,562	-		PP_2068	0.24	+0.8
2,353,612	+		PP_2068	0.28	+1.5
2,353,612	+		PP_2068	0.28	+0.4
2,353,613	-		PP_2068	0.28	+1.1
2,353,913	-		PP_2068	0.52	+1.2
2,354,175	+		PP_2068	0.72	+1.6
2,354,175	+		PP_2068	0.72	+0.4
2,354,176	-		PP_2068	0.72	+0.2
2,354,176	-		PP_2068	0.72	+0.3
2,354,179	+				+1.4
2,354,180	-		PP_2068	0.72	-1.5
2,354,225	-		PP_2068	0.76	+0.4
2,354,225	-		PP_2068	0.76	+1.2
2,354,225	-		PP_2068	0.76	-0.1