Strain Fitness in Pseudomonas putida KT2440 around PP_2045

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
2,324,353	+		PP_2043	0.78	+1.0
2,324,353	+		PP_2043	0.78	-0.2
2,324,353	+		PP_2043	0.78	+1.9
2,324,353	+		PP_2043	0.78	+1.2
2,324,353	+		PP_2043	0.78	+0.9
2,324,353	+		PP_2043	0.78	+0.8
2,324,353	+		PP_2043	0.78	+1.0
2,324,353	+		PP_2043	0.78	-0.7
2,324,354	-		PP_2043	0.78	+1.0
2,324,354	-		PP_2043	0.78	+0.9
2,324,354	-		PP_2043	0.78	+2.2
2,324,354	-		PP_2043	0.78	+0.8
2,324,354	-		PP_2043	0.78	+0.3
2,324,354	-		PP_2043	0.78	+2.2
2,324,354	-		PP_2043	0.78	+0.1
2,324,354	-		PP_2043	0.78	+3.5
2,324,354	-		PP_2043	0.78	-0.1
2,324,354	-		PP_2043	0.78	+2.2
2,324,354	-		PP_2043	0.78	-0.8
2,324,354	-		PP_2043	0.78	-0.3
2,324,356	-		PP_2043	0.78	+0.4
2,324,357	+		PP_2043	0.79	+2.7
2,324,357	+		PP_2043	0.79	-1.3
2,324,358	-		PP_2043	0.79	-1.1
2,324,358	-		PP_2043	0.79	-1.1
2,324,376	-		PP_2043	0.80	+1.0
2,324,417	+		PP_2043	0.83	+0.0
2,324,510	+				-0.9
2,324,511	-				-1.8
2,324,531	+				-2.6
2,324,733	+		PP_2044	0.24	+2.7
2,324,733	+		PP_2044	0.24	+0.0
2,325,125	+		PP_5499	0.36	+2.5
2,325,125	+		PP_5499	0.36	+1.3
2,325,125	+		PP_5499	0.36	-1.5
2,325,125	+		PP_5499	0.36	-0.1
2,325,125	+		PP_5499	0.36	+2.0
2,325,126	-		PP_5499	0.36	-2.5
2,325,513	+				-0.6
2,325,514	-				+0.2
2,325,514	-				+0.0
2,325,581	-		PP_2045	0.12	+1.3
2,325,640	+				+2.8
2,325,641	-		PP_2045	0.15	+0.3
2,325,641	-		PP_2045	0.15	-0.1
2,325,641	-		PP_2045	0.15	+0.3
2,325,664	+		PP_2045	0.16	-2.5
2,325,772	+		PP_2045	0.22	+0.8
2,325,772	+		PP_2045	0.22	+1.6
2,325,973	+		PP_2045	0.32	-1.2
2,326,042	+		PP_2045	0.36	+0.8
2,326,043	-		PP_2045	0.36	-0.8
2,326,043	-		PP_2045	0.36	-0.4
2,326,051	+		PP_2045	0.36	-0.7
2,326,051	+		PP_2045	0.36	-0.9
2,326,085	-		PP_2045	0.38	-1.9
2,326,085	-				+0.2
2,326,085	-		PP_2045	0.38	+0.5
2,326,085	-		PP_2045	0.38	+1.6
2,326,085	-		PP_2045	0.38	+1.1
2,326,085	-		PP_2045	0.38	+0.5
2,326,100	-		PP_2045	0.39	+2.8
2,326,207	+		PP_2045	0.44	+2.3
2,326,207	+		PP_2045	0.44	+0.8
2,326,207	+		PP_2045	0.44	-1.4
2,326,207	+		PP_2045	0.44	-0.2
2,326,207	+		PP_2045	0.44	+1.4
2,326,207	+		PP_2045	0.44	-1.5
2,326,208	-		PP_2045	0.44	+1.5
2,326,208	-		PP_2045	0.44	-0.5
2,326,208	-		PP_2045	0.44	+2.8
2,326,208	-		PP_2045	0.44	+0.9
2,326,208	-		PP_2045	0.44	-1.2
2,326,208	-		PP_2045	0.44	-1.8
2,326,208	-		PP_2045	0.44	-2.6
2,326,211	+		PP_2045	0.44	-1.3
2,326,211	+		PP_2045	0.44	+0.8
2,326,211	+		PP_2045	0.44	+1.5
2,326,212	-		PP_2045	0.44	+1.4
2,326,212	-		PP_2045	0.44	-1.0
2,326,231	+		PP_2045	0.45	+0.1
2,326,231	+		PP_2045	0.45	+1.9
2,326,232	-		PP_2045	0.45	-1.6
2,326,327	+		PP_2045	0.50	-2.8
2,326,378	-		PP_2045	0.53	+3.5
2,326,439	-		PP_2045	0.56	-1.4
2,326,636	+		PP_2045	0.66	+1.8
2,326,636	+		PP_2045	0.66	+5.6
2,326,636	+		PP_2045	0.66	-0.2
2,326,636	+		PP_2045	0.66	-1.7
2,326,637	-		PP_2045	0.66	-2.6
2,326,642	+		PP_2045	0.66	-0.4
2,326,642	+		PP_2045	0.66	+0.1
2,326,642	+		PP_2045	0.66	-2.8
2,326,642	+		PP_2045	0.66	-1.3
2,326,642	+		PP_2045	0.66	+0.5
2,326,643	-		PP_2045	0.66	+1.9
2,326,643	-		PP_2045	0.66	+1.9
2,326,804	+		PP_2045	0.75	+2.3
2,326,804	+		PP_2045	0.75	+1.8
2,326,804	+		PP_2045	0.75	-2.0
2,326,847	-		PP_2045	0.77	-0.6
2,326,960	+				+2.2
2,326,960	+		PP_2045	0.82	-1.9
2,326,960	+		PP_2045	0.82	+0.6
2,326,960	+		PP_2045	0.82	+0.6
2,326,961	-		PP_2045	0.83	-1.2
2,326,961	-		PP_2045	0.83	-1.1
2,326,961	-		PP_2045	0.83	+0.5
2,327,068	+		PP_2045	0.88	-1.7
2,327,069	-		PP_2045	0.88	-2.0
2,327,338	+				-0.6
2,327,365	+				-0.6
2,327,622	+		PP_2046	0.23	+0.2
2,327,636	-		PP_2046	0.25	-0.1
2,327,636	-		PP_2046	0.25	+1.5
2,327,638	-		PP_2046	0.25	-0.3
2,327,948	+		PP_2046	0.59	-0.8
2,327,948	+		PP_2046	0.59	+0.1
2,328,242	+				+1.0
2,328,242	+				-1.5