Strain Fitness in Pseudomonas putida KT2440 around PP_1936

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
2,183,743	-				+0.5
2,183,789	-				-0.0
2,183,828	-				+0.7
2,183,942	+				+0.0
2,183,992	+				+1.3
2,184,004	+		PP_5490	0.11	+2.7
2,184,167	+		PP_5490	0.40	+0.2
2,184,167	+		PP_5490	0.40	-3.4
2,184,168	-		PP_5490	0.40	-2.2
2,184,236	+		PP_5490	0.52	-0.6
2,184,237	-		PP_5490	0.52	+0.9
2,184,256	+		PP_5490	0.55	-2.3
2,184,257	-		PP_5490	0.55	+0.2
2,184,265	+		PP_5490	0.57	-3.0
2,184,350	-		PP_5490	0.72	+1.5
2,184,377	+		PP_5490	0.77	-1.6
2,184,412	+		PP_5490	0.83	-0.3
2,184,567	+				+0.6
2,184,567	+				-3.1
2,184,568	-				+0.0
2,184,568	-				+0.4
2,184,628	+				+0.1
2,184,628	+				-1.9
2,184,628	+				+0.3
2,184,628	+				-2.6
2,184,658	-				-0.2
2,184,739	+				-2.0
2,184,739	+				+1.9
2,184,751	+				+2.0
2,184,752	-				+0.0
2,184,752	-				-0.3
2,184,763	-				+0.9
2,184,911	-				-0.1
2,185,054	+		PP_1936	0.13	-3.7
2,185,109	-		PP_1936	0.15	-0.5
2,185,114	-		PP_1936	0.15	+0.3
2,185,146	+		PP_1936	0.16	-1.2
2,185,158	-		PP_1936	0.17	+0.9
2,185,158	-		PP_1936	0.17	-1.1
2,185,449	+		PP_1936	0.26	-2.3
2,185,545	+		PP_1936	0.30	-0.8
2,185,596	-		PP_1936	0.31	+0.0
2,185,596	-		PP_1936	0.31	-2.2
2,185,626	+		PP_1936	0.32	-1.4
2,185,627	-		PP_1936	0.33	-0.3
2,185,633	+		PP_1936	0.33	-1.8
2,185,638	-		PP_1936	0.33	-0.9
2,185,673	+		PP_1936	0.34	+3.3
2,185,673	+		PP_1936	0.34	-0.9
2,185,730	+		PP_1936	0.36	-2.6
2,185,859	+		PP_1936	0.40	-0.0
2,185,996	-		PP_1936	0.45	-0.4
2,186,369	+		PP_1936	0.58	+0.7
2,186,857	+		PP_1936	0.74	+0.5
2,186,900	+		PP_1936	0.76	-2.4
2,186,901	-		PP_1936	0.76	+0.0
2,186,992	-		PP_1936	0.79	-1.1
2,187,073	-		PP_1936	0.82	+0.0
2,187,073	-		PP_1936	0.82	-0.4
2,187,112	-		PP_1936	0.83	+0.4
2,187,192	+		PP_1936	0.86	-1.8
2,187,668	-				-0.6
2,187,745	+		PP_5491	0.15	-1.5
2,188,158	-		PP_5491	0.60	+2.3
2,188,220	+		PP_5491	0.67	-2.4
2,188,402	+		PP_5491	0.86	+1.6
2,188,522	-				+0.3