Strain Fitness in Pseudomonas putida KT2440 around PP_1844

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
2,066,378	+				-0.4
2,066,378	+				-3.0
2,066,384	+				+0.8
2,066,426	+		PP_1843	0.13	-0.2
2,066,610	-		PP_1843	0.32	-2.4
2,066,687	+		PP_1843	0.40	+1.1
2,066,764	+		PP_1843	0.48	+1.7
2,066,764	+		PP_1843	0.48	+2.5
2,066,764	+		PP_1843	0.48	+0.3
2,066,765	-				-0.6
2,066,765	-		PP_1843	0.48	-2.8
2,066,819	+		PP_1843	0.53	+0.9
2,066,820	-		PP_1843	0.53	+0.0
2,066,849	+		PP_1843	0.56	-0.4
2,066,954	+		PP_1843	0.67	-1.1
2,066,955	-		PP_1843	0.67	+0.7
2,066,973	+		PP_1843	0.69	+0.2
2,066,973	+		PP_1843	0.69	+1.7
2,066,974	-		PP_1843	0.69	-1.2
2,066,974	-		PP_1843	0.69	-0.5
2,066,974	-		PP_1843	0.69	+1.2
2,067,020	+		PP_1843	0.74	+1.3
2,067,020	-		PP_1843	0.74	+0.5
2,067,245	+				-1.2
2,067,303	+				-0.8
2,067,303	+				+0.0
2,067,303	+				+0.5
2,067,303	+				+2.3
2,067,511	+		PP_1844	0.24	+2.2
2,067,669	+		PP_1844	0.46	+2.0
2,067,669	+		PP_1844	0.46	+2.3
2,067,670	-		PP_1844	0.46	-0.7
2,067,689	-		PP_1844	0.49	+0.4
2,067,932	-		PP_1844	0.83	-0.2
2,067,932	-		PP_1844	0.83	-1.9
2,068,037	+				-1.2
2,068,038	-				-1.0
2,068,038	-				+0.9
2,068,038	-				+1.1
2,068,048	+				+3.1
2,068,049	-				+0.8
2,068,049	-				-0.3
2,068,058	+				-1.6
2,068,059	-				-3.0
2,068,133	+				-0.7
2,068,134	-				-0.5
2,068,185	-				+3.3
2,068,491	+		PP_1845	0.46	+1.4
2,068,492	-		PP_1845	0.46	+3.5
2,068,498	+		PP_1845	0.47	+2.5
2,068,498	+		PP_1845	0.47	+0.3
2,068,699	-		PP_1845	0.76	-0.6
2,068,817	+				+1.3
2,068,817	+				+3.5
2,068,850	+				-0.8
2,068,850	+				-1.0
2,068,850	+				+0.9
2,068,851	-				-1.1
2,068,851	-				-0.3
2,068,851	-				-0.9
2,068,921	-				+1.6