Strain Fitness in Pseudomonas putida KT2440 around PP_1721

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
1,920,728	+		PP_1720	0.17	+1.0
1,920,728	+		PP_1720	0.17	+0.2
1,920,728	+		PP_1720	0.17	-0.4
1,920,728	+		PP_1720	0.17	+2.3
1,920,729	-		PP_1720	0.17	-1.5
1,920,729	-		PP_1720	0.17	-1.6
1,920,729	-		PP_1720	0.17	-1.8
1,920,729	-		PP_1720	0.17	+0.6
1,920,729	-		PP_1720	0.17	-0.5
1,920,861	+		PP_1720	0.31	-1.2
1,920,862	-		PP_1720	0.31	+0.0
1,920,917	+		PP_1720	0.37	+1.0
1,920,917	+		PP_1720	0.37	+0.4
1,920,917	+		PP_1720	0.37	-0.6
1,920,917	+		PP_1720	0.37	-1.4
1,920,918	-		PP_1720	0.37	+2.3
1,920,918	-		PP_1720	0.37	-0.7
1,920,918	-		PP_1720	0.37	+1.1
1,920,918	-		PP_1720	0.37	-0.9
1,921,082	+		PP_1720	0.54	-1.2
1,921,083	-		PP_1720	0.54	+0.6
1,921,116	+		PP_1720	0.57	+0.0
1,921,117	-		PP_1720	0.58	-0.6
1,921,117	-				+3.4
1,921,117	-		PP_1720	0.58	-0.4
1,921,120	+		PP_1720	0.58	-1.6
1,921,120	+		PP_1720	0.58	-0.2
1,921,120	+		PP_1720	0.58	-1.8
1,921,190	+		PP_1720	0.65	-1.6
1,921,191	-		PP_1720	0.65	-0.6
1,921,381	-		PP_1720	0.85	+1.6
1,921,431	-				+1.1
1,921,457	+				+0.4
1,921,457	+				-2.3
1,921,458	-				-0.4
1,921,458	-				+1.1
1,921,523	+				-0.2
1,921,577	+				+0.5
1,921,711	-				+2.0
1,921,785	+		PP_1721	0.30	+0.9
1,921,786	-		PP_1721	0.31	-0.8
1,921,816	-		PP_1721	0.35	+3.2
1,921,972	-		PP_1721	0.59	+0.6
1,922,070	+		PP_1721	0.74	-1.5
1,922,070	+		PP_1721	0.74	+1.1
1,922,070	+		PP_1721	0.74	+1.0
1,922,071	-		PP_1721	0.74	+0.3
1,922,071	-		PP_1721	0.74	+1.8
1,922,071	-		PP_1721	0.74	+0.6
1,922,071	-		PP_1721	0.74	+1.7
1,922,071	-		PP_1721	0.74	+2.0
1,922,100	+		PP_1721	0.79	+0.3
1,922,100	+				+0.6
1,922,100	+		PP_1721	0.79	-0.3
1,922,101	-		PP_1721	0.79	-0.6
1,922,101	-		PP_1721	0.79	+1.9
1,922,101	-		PP_1721	0.79	-0.2
1,922,296	+				+0.3
1,922,296	+				-0.5
1,922,534	+		PP_1722	0.28	-0.4
1,922,534	+		PP_1722	0.28	-1.2
1,922,534	+		PP_1722	0.28	+0.5
1,922,579	+		PP_1722	0.33	-0.6
1,922,580	-		PP_1722	0.33	-0.9
1,922,580	-		PP_1722	0.33	-3.3
1,922,893	+		PP_1722	0.65	+1.4
1,922,894	-		PP_1722	0.65	+1.3
1,922,993	+		PP_1722	0.75	+0.8
1,922,993	+		PP_1722	0.75	-0.7
1,922,994	-		PP_1722	0.75	+0.7
1,922,994	-		PP_1722	0.75	+2.0
1,923,034	+		PP_1722	0.79	+0.0
1,923,064	+		PP_1722	0.82	+0.7
1,923,065	-		PP_1722	0.82	-0.2
1,923,065	-		PP_1722	0.82	+0.3
1,923,206	+				-0.8
1,923,206	+				+1.5
1,923,226	+				+0.7
1,923,227	-				-2.1