Strain Fitness in Pseudomonas putida KT2440 around PP_1649

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
1,840,192	-		PP_1647	0.20	-0.8
1,840,340	-		PP_1647	0.55	+1.7
1,840,381	+		PP_1647	0.64	-1.8
1,840,382	-		PP_1647	0.64	-0.8
1,840,420	+		PP_1647	0.73	+1.6
1,840,421	-		PP_1647	0.73	+2.9
1,840,421	-		PP_1647	0.73	+0.4
1,840,921	-				+1.2
1,840,969	+				-1.1
1,840,970	-				+1.0
1,840,976	-				+0.6
1,841,186	-		PP_1649	0.21	-3.6
1,841,382	+		PP_1649	0.40	-0.0
1,841,447	-		PP_1649	0.46	-0.3
1,841,593	+		PP_1649	0.60	-0.5
1,841,728	+		PP_1649	0.73	-0.3
1,841,933	-				-0.1
1,842,163	+				-4.7
1,842,164	-				-3.9
1,842,183	-				-4.6
1,842,183	-				-4.7
1,842,208	+				-5.5
1,842,208	+				-2.1
1,842,208	+				-3.8
1,842,209	-				-4.5
1,842,209	-				-4.8
1,842,256	+				-4.0
1,842,256	+				-6.0
1,842,362	-		PP_1650	0.12	-1.7
1,842,486	-		PP_1650	0.16	-4.9
1,842,682	+		PP_1650	0.23	-5.2
1,842,683	-		PP_1650	0.23	-4.5
1,842,712	+		PP_1650	0.24	-4.4
1,842,745	+		PP_1650	0.26	-3.8
1,842,923	+		PP_1650	0.32	-4.1
1,842,923	+		PP_1650	0.32	-6.1
1,842,923	+		PP_1650	0.32	-4.4
1,842,933	-		PP_1650	0.32	-4.6
1,842,965	-		PP_1650	0.34	-4.5
1,842,965	-		PP_1650	0.34	-3.5
1,843,001	+		PP_1650	0.35	-3.8
1,843,001	+		PP_1650	0.35	-4.0
1,843,002	-		PP_1650	0.35	-3.7