Strain Fitness in Pseudomonas putida KT2440 around PP_1447

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
1,650,233	+		PP_1446	0.60	+0.7
1,650,284	+		PP_1446	0.62	-0.9
1,650,284	+		PP_1446	0.62	-3.6
1,650,285	-		PP_1446	0.62	+1.9
1,650,305	+		PP_1446	0.63	+2.3
1,650,338	+		PP_1446	0.65	-0.7
1,650,440	+		PP_1446	0.70	-2.1
1,650,700	+		PP_1446	0.82	+0.2
1,650,729	-		PP_1446	0.84	+1.9
1,650,729	-		PP_1446	0.84	-0.6
1,650,729	-		PP_1446	0.84	-2.5
1,650,729	-		PP_1446	0.84	-0.4
1,650,837	+		PP_1446	0.89	+1.7
1,650,861	+				+0.3
1,651,052	+				+2.0
1,651,052	+				+0.4
1,651,053	-				+0.0
1,651,183	-				+1.7
1,651,183	-				-0.5
1,651,183	-				+1.0
1,651,183	-				+0.3
1,651,192	+				-0.6
1,651,193	-				+1.4
1,651,193	-				+0.6
1,651,295	+		PP_1447	0.40	+1.6
1,651,296	-		PP_1447	0.40	+1.6
1,651,296	-		PP_1447	0.40	+3.1
1,651,296	-		PP_1447	0.40	+0.5
1,651,418	+		PP_1447	0.89	+1.6
1,651,418	+		PP_1447	0.89	-1.1
1,651,419	-		PP_1447	0.90	-3.2
1,651,419	-		PP_1447	0.90	+0.2
1,651,520	-		PP_1448	0.12	-2.2
1,651,703	+		PP_1448	0.40	+1.0
1,651,704	-		PP_1448	0.41	-1.2
1,651,725	+		PP_1448	0.44	+2.0
1,651,726	-		PP_1448	0.44	-0.3
1,651,813	-		PP_1448	0.58	+2.4
1,651,813	-		PP_1448	0.58	+1.4
1,651,813	-		PP_1448	0.58	+2.4
1,651,813	-		PP_1448	0.58	-1.5
1,651,821	+		PP_1448	0.59	-0.9
1,651,821	+		PP_1448	0.59	-0.9
1,651,821	+		PP_1448	0.59	-1.0
1,651,822	-		PP_1448	0.59	+0.4
1,651,822	-		PP_1448	0.59	+0.3
1,651,822	-		PP_1448	0.59	-0.0
1,651,822	-		PP_1448	0.59	+1.7
1,651,896	+		PP_1448	0.71	-2.3
1,651,938	+		PP_1448	0.77	+1.3
1,651,938	+		PP_1448	0.77	+0.4
1,651,938	+		PP_1448	0.77	+4.0
1,651,939	-		PP_1448	0.78	+1.1
1,651,939	-		PP_1448	0.78	-0.8
1,651,939	-		PP_1448	0.78	-2.6
1,651,939	-		PP_1448	0.78	+0.0
1,651,975	-		PP_1448	0.83	+3.5
1,652,087	-				-1.6
1,652,148	-				+0.9
1,652,148	-				-0.4
1,652,243	+				-0.1
1,652,244	-				-1.2
1,652,289	+				+1.4
1,652,290	-				+0.0