Strain Fitness in Pseudomonas putida KT2440 around PP_1428

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
1,626,906	+				-0.7
1,626,907	-				-0.7
1,626,932	+				-0.5
1,626,932	+				-0.5
1,626,932	+				+0.3
1,626,934	+				-3.3
1,626,934	+				+0.3
1,626,934	+				-2.6
1,626,934	+				-2.2
1,626,934	+				+1.3
1,626,934	+				-1.0
1,626,935	-				+3.0
1,626,935	-				-1.6
1,626,935	-				-0.6
1,626,963	+				-0.0
1,627,018	+				-0.5
1,627,033	+				-1.5
1,627,083	-				+0.1
1,627,093	-				-1.0
1,627,093	-				+1.5
1,627,116	-				-0.3
1,627,211	+				+1.3
1,627,211	+				-1.5
1,627,211	+				-0.4
1,627,211	+				-2.6
1,627,211	+				+0.9
1,627,211	+				+1.3
1,627,212	-				-1.3
1,627,277	+				+2.4
1,627,357	+		PP_1427	0.14	+0.7
1,627,357	+		PP_1427	0.14	+1.1
1,627,421	+		PP_1427	0.25	+1.4
1,627,421	+		PP_1427	0.25	-2.8
1,627,421	+		PP_1427	0.25	-0.8
1,627,421	+		PP_1427	0.25	+0.7
1,627,422	-		PP_1427	0.26	-1.0
1,627,422	-		PP_1427	0.26	+1.4
1,627,448	-		PP_1427	0.30	-2.8
1,627,487	-		PP_1427	0.37	-0.4
1,627,488	+		PP_1427	0.37	+0.2
1,627,488	+		PP_1427	0.37	-1.7
1,627,489	-		PP_1427	0.37	-0.0
1,627,489	-		PP_1427	0.37	+2.5
1,627,528	+		PP_1427	0.44	-1.7
1,627,528	+		PP_1427	0.44	+0.8
1,627,718	+		PP_1427	0.76	-2.3
1,627,719	-		PP_1427	0.77	-0.2
1,627,817	+				-1.1
1,627,817	+				+2.2
1,627,818	-				-0.3
1,627,821	+				+1.3
1,627,821	+				-0.9
1,627,821	+				-2.3
1,627,821	+				+0.7
1,627,822	-				+1.3
1,627,822	-				+0.3
1,627,822	-				+1.3
1,627,822	-				-1.0
1,627,822	-				-0.8
1,627,822	-				+1.4
1,628,196	+		PP_1428	0.52	-0.3
1,628,196	+		PP_1428	0.52	-2.0
1,628,196	+		PP_1428	0.52	-2.1
1,628,196	+		PP_1428	0.52	-0.7
1,628,197	-		PP_1428	0.52	-1.3
1,628,197	-		PP_1428	0.52	-2.0
1,628,446	+				-2.4
1,628,480	+				+0.1
1,628,481	-				-2.8
1,628,481	-				-3.5
1,628,481	-				+1.8
1,628,481	-				-1.5
1,628,501	+				-1.3
1,628,620	+		PP_1429	0.13	-0.4
1,628,620	+		PP_1429	0.13	-0.6
1,628,621	-		PP_1429	0.13	-2.0
1,628,621	-		PP_1429	0.13	-1.6
1,628,621	-		PP_1429	0.13	-2.2
1,628,621	-		PP_1429	0.13	+0.7
1,628,639	-		PP_1429	0.15	+0.2
1,628,854	+		PP_1429	0.38	+1.4
1,628,910	+		PP_1429	0.43	-0.6
1,628,910	+		PP_1429	0.43	-2.3
1,629,192	-		PP_1429	0.73	-2.0
1,629,235	+		PP_1429	0.77	+0.8
1,629,235	+		PP_1429	0.77	+1.0
1,629,235	+		PP_1429	0.77	+1.3
1,629,236	-		PP_1429	0.77	-0.2
1,629,236	-		PP_1429	0.77	-1.5
1,629,236	-		PP_1429	0.77	-0.7
1,629,315	-		PP_1429	0.85	+2.8
1,629,315	-		PP_1429	0.85	+0.9
1,629,348	+		PP_1429	0.89	+2.2