Strain Fitness in Pseudomonas putida KT2440 around PP_1321

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
1,506,758	-		PP_1319	0.84	-1.6
1,506,802	+				-0.8
1,506,802	+				-1.4
1,506,802	+				-2.2
1,506,802	+				-2.0
1,506,802	+				-1.7
1,506,802	+				-1.8
1,506,802	+				-1.7
1,506,803	-				-2.7
1,506,803	-				-2.2
1,506,803	-				-1.0
1,506,803	-				+0.1
1,506,803	-				-2.2
1,506,814	+				-2.3
1,506,815	-				-1.8
1,506,815	-				-0.8
1,506,815	-				+0.9
1,506,815	-				-2.8
1,506,815	-				-1.2
1,506,842	-				-1.0
1,506,860	-				-1.4
1,506,860	-				-2.4
1,506,860	-				-2.5
1,506,888	+				+0.7
1,506,888	+				-1.2
1,506,922	+				-2.7
1,506,922	+				-1.2
1,506,922	+				+0.8
1,506,922	+				-1.7
1,506,928	+				-1.3
1,506,928	+				-0.2
1,506,929	-				+0.4
1,506,929	-				-1.4
1,506,994	-				+0.6
1,507,015	+				+1.5
1,507,023	+				+2.2
1,507,024	-				-2.2
1,507,024	-				-0.5
1,507,044	+				+0.2
1,507,044	+				-2.7
1,507,149	+		PP_1320	0.25	-0.4
1,507,150	-		PP_1320	0.25	+0.8
1,507,150	-		PP_1320	0.25	+1.6
1,507,191	+		PP_1320	0.31	-0.6
1,507,191	+		PP_1320	0.31	-0.5
1,507,216	-		PP_1320	0.35	-0.6
1,507,216	-		PP_1320	0.35	+3.3
1,507,216	-		PP_1320	0.35	+0.9
1,507,256	-		PP_1320	0.42	-2.3
1,507,257	+		PP_1320	0.42	-0.4
1,507,346	+		PP_1320	0.56	+1.1
1,507,472	-		PP_1320	0.76	-0.4
1,507,480	+		PP_1320	0.78	+1.9
1,507,543	-		PP_1320	0.88	+0.1
1,507,543	-		PP_1320	0.88	+0.8
1,507,617	+				-2.6
1,507,618	-				-1.4
1,507,618	-				+0.9
1,507,649	-		PP_1321	0.11	-1.6
1,507,666	+		PP_1321	0.14	-2.3
1,507,667	-		PP_1321	0.15	+0.3
1,507,667	-		PP_1321	0.15	-1.5
1,507,701	+		PP_1321	0.22	+1.9
1,507,702	-		PP_1321	0.22	+1.0
1,507,702	-		PP_1321	0.22	+0.1
1,507,702	-		PP_1321	0.22	+1.0
1,507,702	-		PP_1321	0.22	-2.4
1,507,702	-		PP_1321	0.22	-0.1
1,507,776	+		PP_1321	0.38	-1.4
1,507,776	+		PP_1321	0.38	-1.2
1,507,776	+		PP_1321	0.38	+0.3
1,507,777	-		PP_1321	0.38	+1.7
1,507,777	-		PP_1321	0.38	+0.6
1,507,894	+		PP_1321	0.64	-3.1
1,507,894	+		PP_1321	0.64	-1.9
1,507,894	+		PP_1321	0.64	-2.7
1,507,895	-		PP_1321	0.64	+0.3
1,507,895	-		PP_1321	0.64	-0.4
1,507,895	-		PP_1321	0.64	-1.9
1,507,895	-		PP_1321	0.64	+0.1
1,507,895	-		PP_1321	0.64	-2.5
1,507,918	-		PP_1321	0.69	+1.3
1,508,059	+				+1.1
1,508,060	-				+1.2
1,508,133	+				-1.4
1,508,475	+		PP_1322	0.61	+1.7
1,508,476	-		PP_1322	0.61	+5.9
1,508,692	+				-0.6