Strain Fitness in Pseudomonas putida KT2440 around PP_1315

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
1,502,206	+		PP_1314	0.29	-2.1
1,502,243	-		PP_1314	0.33	-2.3
1,502,318	-		PP_1314	0.40	+1.5
1,502,318	-		PP_1314	0.40	-2.7
1,502,504	-		PP_1314	0.58	+1.4
1,502,755	+		PP_1314	0.82	-1.2
1,502,756	-		PP_1314	0.82	+0.8
1,502,756	-		PP_1314	0.82	-0.8
1,502,782	+		PP_1314	0.85	+1.4
1,502,782	+		PP_1314	0.85	-3.1
1,502,783	-		PP_1314	0.85	-0.2
1,502,783	-		PP_1314	0.85	+1.1
1,502,783	-		PP_1314	0.85	+1.8
1,502,783	-		PP_1314	0.85	+0.7
1,502,843	-				+0.3
1,502,915	+				-0.8
1,502,933	-				-2.3
1,502,944	+				+1.1
1,502,962	-				-1.5
1,504,099	-				-2.9
1,504,131	+				+0.8
1,504,131	+				-1.7
1,504,137	+				+0.3
1,504,137	+				+0.8
1,504,138	-				-0.8
1,504,138	-				-2.1
1,504,175	+				-0.8
1,504,208	-				-1.0
1,504,208	-				-1.5
1,504,245	+				-2.2
1,504,245	+				-2.0
1,504,245	+				-2.3
1,504,245	+				-0.1
1,504,245	+				-1.8
1,504,246	-				-2.4
1,504,246	-				+2.6
1,504,246	-				-0.3
1,504,511	-		PP_1317	0.36	-2.3
1,504,608	+		PP_1317	0.53	+0.7
1,504,609	-		PP_1317	0.53	-1.8
1,504,609	-		PP_1317	0.53	-2.0