Strain Fitness in Pseudomonas putida KT2440 around PP_1264

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
1,444,941	+		PP_1263	0.37	-0.5
1,444,941	+		PP_1263	0.37	+0.6
1,444,941	+		PP_1263	0.37	-0.2
1,444,942	-				+0.9
1,445,427	+		PP_1263	0.69	+0.0
1,445,428	-		PP_1263	0.69	+0.2
1,445,428	-		PP_1263	0.69	+2.8
1,445,646	+		PP_1263	0.83	-0.7
1,445,647	-		PP_1263	0.83	+1.0
1,445,647	-		PP_1263	0.83	+1.7
1,445,681	+		PP_1263	0.85	+0.5
1,445,699	-		PP_1263	0.86	+1.6
1,445,999	+				-0.1
1,445,999	+				-1.7
1,445,999	+				+0.7
1,446,000	-				-0.8
1,446,000	-				-1.5
1,446,000	-				+0.1
1,446,000	-				-3.5
1,446,031	+				-2.4
1,446,031	+				+1.0
1,446,031	+				+0.8
1,446,031	+				-1.8
1,446,032	-				-2.5
1,446,032	-				-1.0
1,446,032	-				-1.1
1,446,140	+		PP_1264	0.11	-1.1
1,446,141	-		PP_1264	0.11	+0.4
1,446,150	+		PP_1264	0.11	-1.5
1,446,151	-		PP_1264	0.11	-1.5
1,446,291	-		PP_1264	0.18	+0.3
1,446,628	+		PP_1264	0.33	+0.9
1,446,775	+		PP_1264	0.40	+0.8
1,446,800	+		PP_1264	0.41	-1.2
1,446,800	+		PP_1264	0.41	+0.7
1,446,800	+		PP_1264	0.41	-1.5
1,446,800	+		PP_1264	0.41	-0.0
1,446,801	-		PP_1264	0.41	-1.8
1,446,801	-		PP_1264	0.41	+0.5
1,446,860	+		PP_1264	0.44	+0.1
1,446,860	+		PP_1264	0.44	+0.3
1,446,860	+		PP_1264	0.44	-2.4
1,446,861	-		PP_1264	0.44	-1.1
1,446,995	+		PP_1264	0.50	+2.2
1,447,058	+		PP_1264	0.53	-2.5
1,447,059	-		PP_1264	0.53	+1.2
1,447,059	-				-0.7
1,447,136	+		PP_1264	0.57	+0.4
1,447,137	-		PP_1264	0.57	+1.5
1,447,197	+		PP_1264	0.59	-1.3
1,447,197	+		PP_1264	0.59	+0.0
1,447,197	+		PP_1264	0.59	-2.8
1,447,198	-		PP_1264	0.59	+1.3
1,447,198	-		PP_1264	0.59	+0.8
1,447,198	-		PP_1264	0.59	-0.1
1,447,389	-		PP_1264	0.68	+1.7
1,447,466	+		PP_1264	0.72	-0.2
1,447,467	-		PP_1264	0.72	-1.7
1,447,484	+		PP_1264	0.73	+0.4
1,447,484	+		PP_1264	0.73	-2.1
1,447,485	-		PP_1264	0.73	-2.5
1,447,676	+		PP_1264	0.81	-1.6
1,447,677	-		PP_1264	0.81	-0.4
1,448,001	-				-3.1
1,448,017	+				-0.2
1,448,017	+				+0.9
1,448,018	-				+0.4
1,448,018	-				-3.2
1,448,018	-				-0.4
1,448,100	+		PP_1265	0.15	-1.1
1,448,100	+		PP_1265	0.15	+0.4
1,448,100	+		PP_1265	0.15	-1.1
1,448,100	+		PP_1265	0.15	-0.3
1,448,100	+		PP_1265	0.15	-1.5
1,448,100	+		PP_1265	0.15	-1.1
1,448,100	+		PP_1265	0.15	+2.1
1,448,101	-		PP_1265	0.15	-1.3
1,448,101	-		PP_1265	0.15	-0.2
1,448,262	+				+0.0
1,448,362	+				-3.1
1,448,362	+				-0.5
1,448,362	+				-2.7
1,448,362	+				-0.2
1,448,362	+				-1.7
1,448,362	+				-0.7
1,448,363	-				+0.7
1,448,363	-				-1.6
1,448,363	-				-0.8
1,448,363	-				-1.5
1,448,450	+		PP_1266	0.20	+1.5
1,448,451	-		PP_1266	0.20	+0.4
1,448,451	-		PP_1266	0.20	-1.0
1,448,515	+		PP_1266	0.27	+0.1
1,448,516	-				+0.1
1,448,681	-		PP_1266	0.46	+0.0
1,448,730	+		PP_1266	0.52	-2.9
1,448,731	-		PP_1266	0.52	-2.2
1,448,731	-		PP_1266	0.52	-0.5
1,448,731	-		PP_1266	0.52	+0.8
1,448,758	+		PP_1266	0.55	-0.7
1,448,759	-		PP_1266	0.56	-1.4
1,448,791	+		PP_1266	0.59	-0.4
1,448,792	-		PP_1266	0.59	+2.5
1,448,792	-		PP_1266	0.59	-2.7
1,448,848	+		PP_1266	0.66	+0.9
1,448,965	+		PP_1266	0.79	+1.4
1,448,965	+		PP_1266	0.79	+2.0
1,448,965	+		PP_1266	0.79	-0.1
1,448,965	+		PP_1266	0.79	-2.8
1,448,966	-		PP_1266	0.80	+1.1
1,448,966	-		PP_1266	0.80	+3.6
1,448,966	-		PP_1266	0.80	-1.4
1,448,966	-		PP_1266	0.80	+1.3
1,448,966	-		PP_1266	0.80	+1.2