Strain Fitness in Pseudomonas putida KT2440 around PP_1232

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
1,409,647	+		PP_1231	0.30	-0.9
1,409,648	-		PP_1231	0.30	-0.6
1,409,749	-		PP_1231	0.39	+0.2
1,409,883	+		PP_1231	0.52	-0.8
1,409,883	+		PP_1231	0.52	-0.3
1,409,883	+		PP_1231	0.52	+0.5
1,409,884	-		PP_1231	0.52	+0.2
1,410,405	+				+0.9
1,410,406	-				+1.3
1,410,434	+				+2.2
1,410,437	-				-1.3
1,410,437	-				+0.2
1,410,437	-				+0.4
1,410,437	-				+0.3
1,410,437	-				-1.8
1,410,448	+				+1.8
1,410,607	+				-1.3
1,410,607	+				-3.3
1,410,643	-		PP_1232	0.10	-3.1
1,410,656	-		PP_1232	0.11	-3.8
1,410,656	-		PP_1232	0.11	-1.6
1,410,656	-		PP_1232	0.11	-3.9
1,410,687	-		PP_1232	0.13	-0.8
1,410,687	-		PP_1232	0.13	-4.4
1,410,687	-		PP_1232	0.13	-2.3
1,410,932	-		PP_1232	0.30	-3.5
1,411,027	+		PP_1232	0.37	-4.0
1,411,028	-		PP_1232	0.37	-1.0
1,411,105	+		PP_1232	0.42	-1.8
1,411,105	+		PP_1232	0.42	-3.0
1,411,106	-		PP_1232	0.42	-0.4
1,411,106	-		PP_1232	0.42	-1.9
1,411,139	-		PP_1232	0.45	-2.1
1,411,187	+		PP_1232	0.48	-3.7
1,411,202	+		PP_1232	0.49	-1.7
1,411,202	+		PP_1232	0.49	-2.7
1,411,563	+		PP_1232	0.74	-0.1
1,411,573	+		PP_1232	0.75	-3.6
1,411,720	+		PP_1232	0.85	-1.4
1,411,738	+		PP_1232	0.86	-4.0
1,411,738	+		PP_1232	0.86	-2.7
1,411,739	-		PP_1232	0.86	-3.3
1,411,739	-		PP_1232	0.86	-2.8
1,411,926	+				+0.7
1,411,926	+				-2.8
1,411,926	+				-2.3
1,411,927	-				-1.1
1,411,927	-				-0.6
1,411,961	+				-0.4
1,411,961	+				-0.9
1,411,962	-				-0.4
1,411,965	+				+0.6
1,411,965	+				+1.0
1,411,966	-				+0.1
1,411,966	-				-0.8
1,411,966	-				+1.1
1,411,966	-				+1.5
1,411,966	-				+0.4
1,411,966	-				-0.0
1,411,970	+				-0.3
1,412,007	+				-1.3
1,412,062	+				-0.7
1,412,063	-				+0.0
1,412,176	+		PP_1233	0.50	+0.6
1,412,236	+		PP_1233	0.75	-0.0
1,412,270	+		PP_1233	0.89	-2.1
1,412,270	+		PP_1233	0.89	+1.3
1,412,270	+		PP_1233	0.89	-0.9
1,412,271	-		PP_1233	0.89	+1.8
1,412,272	+		PP_1233	0.90	-0.3
1,412,272	+		PP_1233	0.90	+1.2
1,412,272	+		PP_1233	0.90	-0.7
1,412,272	+		PP_1233	0.90	-1.1
1,412,272	+		PP_1233	0.90	-2.8
1,412,273	-				+0.5
1,412,273	-				+0.8
1,412,273	-				-0.8
1,412,273	-				-1.6
1,412,273	-				-0.6
1,412,276	+				-0.2
1,412,276	+				+0.4
1,412,276	+				+1.3
1,412,276	+				+0.9
1,412,276	+				-1.0
1,412,277	-				-2.4
1,412,350	+				-1.3
1,412,351	-				-2.4
1,412,351	-				-2.0
1,412,507	+		PP_1234	0.18	-1.2
1,412,511	+		PP_1234	0.18	-0.6
1,412,705	+		PP_1234	0.36	+1.7
1,412,705	+		PP_1234	0.36	+0.7
1,412,706	-		PP_1234	0.36	-0.2
1,412,706	-		PP_1234	0.36	-0.7
1,412,809	+		PP_1234	0.46	-0.1
1,412,809	+		PP_1234	0.46	-2.7
1,412,810	-		PP_1234	0.46	-0.3
1,412,885	-		PP_1234	0.53	-2.7