Strain Fitness in Pseudomonas putida KT2440 around PP_1065

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
1,218,725	+		PP_1064	0.23	+0.8
1,218,726	-		PP_1064	0.23	-0.2
1,218,851	+		PP_1064	0.34	+0.2
1,218,851	+		PP_1064	0.34	+1.1
1,218,852	-		PP_1064	0.34	+0.1
1,218,929	+		PP_1064	0.41	-0.5
1,218,929	+		PP_1064	0.41	-2.8
1,218,929	+		PP_1064	0.41	+1.1
1,218,930	-		PP_1064	0.41	+0.5
1,218,959	+		PP_1064	0.44	+1.6
1,218,960	-		PP_1064	0.44	+0.1
1,219,029	+		PP_1064	0.50	+0.2
1,219,030	-		PP_1064	0.50	+1.2
1,219,252	-		PP_1064	0.69	-1.0
1,219,252	-		PP_1064	0.69	-0.0
1,219,296	-		PP_1064	0.73	+1.9
1,219,404	+		PP_1064	0.83	+0.8
1,219,404	+		PP_1064	0.83	+0.8
1,219,425	+		PP_1064	0.85	-2.4
1,219,554	-				-1.0
1,219,554	-				+1.5
1,219,720	+		PP_1065	0.30	+1.4
1,219,720	+		PP_1065	0.30	-0.4
1,219,720	+		PP_1065	0.30	+1.0
1,219,721	-		PP_1065	0.31	+0.0
1,219,721	-		PP_1065	0.31	-0.9
1,219,721	-		PP_1065	0.31	-0.0
1,219,721	-		PP_1065	0.31	+0.7
1,219,721	-		PP_1065	0.31	+0.1
1,219,721	-		PP_1065	0.31	+0.6
1,219,724	+		PP_1065	0.32	+0.3
1,219,724	+		PP_1065	0.32	+1.1
1,219,724	+		PP_1065	0.32	-1.6
1,219,724	+		PP_1065	0.32	+2.8
1,219,724	+		PP_1065	0.32	+1.2
1,219,725	-		PP_1065	0.32	-1.3
1,219,725	-		PP_1065	0.32	+1.2
1,219,725	-		PP_1065	0.32	-0.8
1,219,725	-		PP_1065	0.32	+0.1
1,219,823	+		PP_1065	0.61	-0.8
1,219,823	+		PP_1065	0.61	+1.7
1,219,824	-		PP_1065	0.61	+0.5
1,219,824	-		PP_1065	0.61	+0.5
1,219,824	-		PP_1065	0.61	-1.5
1,219,824	-		PP_1065	0.61	+1.5
1,219,874	+		PP_1065	0.76	+4.4
1,219,875	-		PP_1065	0.76	-1.1
1,219,875	-		PP_1065	0.76	-3.7
1,219,877	+		PP_1065	0.77	+0.2
1,219,877	+		PP_1065	0.77	+0.7
1,219,877	+		PP_1065	0.77	+1.2
1,219,878	-		PP_1065	0.77	+0.8
1,219,878	-		PP_1065	0.77	+1.1
1,219,878	-		PP_1065	0.77	+0.8
1,219,991	-				-0.2
1,220,185	+		PP_1066	0.16	-1.0
1,220,392	+		PP_1066	0.31	+0.5
1,220,392	+		PP_1066	0.31	+0.3
1,220,392	+		PP_1066	0.31	-2.2