Strain Fitness in Pseudomonas putida KT2440 around PP_0900

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
1,039,608	+				+1.4
1,039,608	+				+3.0
1,039,609	-				-0.6
1,039,738	-		PP_0899	0.10	+2.4
1,039,738	-		PP_0899	0.10	+0.9
1,039,738	-		PP_0899	0.10	+0.3
1,039,738	-		PP_0899	0.10	+0.7
1,039,897	-		PP_0899	0.27	+1.0
1,039,897	-		PP_0899	0.27	+0.6
1,040,026	+		PP_0899	0.41	-2.4
1,040,046	+		PP_0899	0.44	+0.7
1,040,047	-		PP_0899	0.44	+0.8
1,040,047	-		PP_0899	0.44	+0.2
1,040,047	-		PP_0899	0.44	-2.3
1,040,193	+		PP_0899	0.60	+0.4
1,040,193	+		PP_0899	0.60	+1.1
1,040,194	-		PP_0899	0.60	-1.3
1,040,194	-		PP_0899	0.60	+3.0
1,040,264	+		PP_0899	0.67	-2.5
1,040,314	+		PP_0899	0.73	+1.9
1,040,314	+		PP_0899	0.73	+2.3
1,040,314	+		PP_0899	0.73	-2.1
1,040,315	-		PP_0899	0.73	+0.9
1,040,315	-		PP_0899	0.73	-1.2
1,040,315	-		PP_0899	0.73	+0.3
1,040,315	-		PP_0899	0.73	-0.3
1,040,315	-		PP_0899	0.73	-1.0
1,040,315	-		PP_0899	0.73	-2.6
1,040,315	-		PP_0899	0.73	-3.3
1,040,566	+				-1.0
1,040,566	+				-0.5
1,040,567	-				-0.7
1,040,668	-				-0.6
1,040,668	-				+2.4
1,040,670	+				-2.6
1,040,670	+				+2.7
1,040,670	+				+1.4
1,040,670	+				-2.3
1,040,670	+				-2.3
1,040,671	-				-2.0
1,040,671	-				-3.2
1,040,763	-		PP_0900	0.22	-2.4
1,040,786	+		PP_0900	0.25	-3.8
1,040,932	-		PP_0900	0.45	-0.1
1,041,168	+		PP_0900	0.77	-3.4
1,041,300	+				-0.3
1,041,459	+				-1.8
1,041,460	-				+0.4
1,041,460	-				+2.0
1,041,460	-				-0.8
1,041,467	-				+1.0
1,041,550	+				+1.3
1,041,590	+		PP_0901	0.11	+1.0
1,041,591	-		PP_0901	0.11	+1.0
1,041,651	-		PP_0901	0.19	+0.9
1,041,651	-		PP_0901	0.19	+3.2
1,041,695	+		PP_0901	0.26	+0.1
1,041,696	-		PP_0901	0.26	+2.3
1,041,696	-		PP_0901	0.26	-1.5
1,041,696	-		PP_0901	0.26	+0.1
1,041,921	-				+1.3
1,041,921	-		PP_0901	0.59	-0.2
1,041,999	+		PP_0901	0.70	+0.0
1,042,150	+				-0.0
1,042,151	-				+1.0
1,042,199	+				+0.7
1,042,200	-				+0.1