Experiment: Tetrahymena sp., Mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0846 and PP_0847 are separated by 3 nucleotides PP_0847 and PP_0848 are separated by 10 nucleotides PP_0848 and PP_0849 are separated by 88 nucleotides PP_0849 and PP_0850 are separated by 28 nucleotides
PP_0846: PP_0846 - DnaK-like molecular chaperone specific for IscU, at 981,124 to 982,986
_0846
PP_0847: PP_0847 - ferredoxin, at 982,990 to 983,331
_0847
PP_0848: PP_0848 - donor of Fe2+ and regulator of cysteine desulfurase activity, at 983,342 to 983,542
_0848
PP_0849: PP_0849 - Nucleoside diphosphate kinase, at 983,631 to 984,056
_0849
PP_0850: PP_0850 - Dual-specificity RNA methyltransferase RlmN, at 984,085 to 985,230
_0850
Position (kb) 983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 982.727 kb on + strand, within PP_0846 at 982.727 kb on + strand, within PP_0846 at 982.727 kb on + strand, within PP_0846 at 983.339 kb on + strand at 983.339 kb on + strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.365 kb on - strand, within PP_0848 at 983.417 kb on + strand, within PP_0848 at 983.417 kb on + strand, within PP_0848 at 983.418 kb on - strand, within PP_0848 at 983.418 kb on - strand, within PP_0848 at 983.540 kb on + strand at 983.540 kb on + strand at 983.583 kb on + strand at 983.583 kb on + strand at 984.043 kb on + strand at 984.043 kb on + strand at 984.044 kb on - strand at 984.067 kb on - strand at 984.096 kb on + strand at 984.096 kb on + strand at 984.156 kb on + strand at 984.156 kb on + strand at 984.242 kb on + strand, within PP_0850 at 984.242 kb on + strand, within PP_0850 at 984.242 kb on + strand, within PP_0850 at 984.243 kb on - strand, within PP_0850 at 984.243 kb on - strand, within PP_0850 at 984.333 kb on + strand, within PP_0850 at 984.333 kb on + strand, within PP_0850 at 984.334 kb on - strand, within PP_0850 at 984.379 kb on + strand, within PP_0850 at 984.379 kb on + strand, within PP_0850 at 984.380 kb on - strand, within PP_0850 at 984.380 kb on - strand, within PP_0850
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-2 remove 982,727 + PP_0846 0.86 -1.0 982,727 + PP_0846 0.86 -2.1 982,727 + PP_0846 0.86 -0.5 983,339 + +2.1 983,339 + -1.5 983,340 - -1.0 983,340 - -2.6 983,340 - -2.8 983,340 - -1.9 983,340 - -2.0 983,365 - PP_0848 0.11 -1.2 983,417 + PP_0848 0.37 -1.1 983,417 + PP_0848 0.37 -1.1 983,418 - PP_0848 0.38 -1.5 983,418 - PP_0848 0.38 -1.6 983,540 + +0.6 983,540 + +1.0 983,583 + -2.3 983,583 + -1.9 984,043 + -1.1 984,043 + -1.2 984,044 - -2.0 984,067 - -1.5 984,096 + -0.2 984,096 + -1.7 984,156 + -2.5 984,156 + -0.9 984,242 + PP_0850 0.14 -2.9 984,242 + PP_0850 0.14 -2.1 984,242 + PP_0850 0.14 -0.7 984,243 - PP_0850 0.14 -1.6 984,243 - PP_0850 0.14 -1.7 984,333 + PP_0850 0.22 -3.3 984,333 + PP_0850 0.22 -0.9 984,334 - PP_0850 0.22 +1.8 984,379 + PP_0850 0.26 +0.8 984,379 + PP_0850 0.26 -1.2 984,380 - PP_0850 0.26 -1.9 984,380 - PP_0850 0.26 -0.8
Or see this region's nucleotide sequence