Strain Fitness in Pseudomonas putida KT2440 around PP_0779

Experiment: Tetrahymena sp., Mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0778 and PP_0779 are separated by 154 nucleotidesPP_0779 and PP_0781 are separated by 207 nucleotides PP_0778: PP_0778 - Glycosyl transferase, group 1 family protein, at 895,224 to 896,414 _0778 PP_0779: PP_0779 - Methyl-accepting chemotaxis transducer/sensory box protein, at 896,569 to 897,909 _0779 PP_0781: PP_0781 - conserved protein of unknown function, at 898,117 to 898,452 _0781 Position (kb) 896 897 898Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 895.588 kb on + strand, within PP_0778at 895.588 kb on + strand, within PP_0778at 895.589 kb on - strand, within PP_0778at 895.589 kb on - strand, within PP_0778at 895.711 kb on + strand, within PP_0778at 895.722 kb on + strand, within PP_0778at 895.981 kb on + strand, within PP_0778at 895.981 kb on + strand, within PP_0778at 895.981 kb on + strand, within PP_0778at 895.982 kb on - strand, within PP_0778at 895.982 kb on - strand, within PP_0778at 896.017 kb on + strand, within PP_0778at 896.018 kb on - strand, within PP_0778at 896.018 kb on - strand, within PP_0778at 896.029 kb on + strand, within PP_0778at 896.029 kb on + strand, within PP_0778at 896.128 kb on + strand, within PP_0778at 896.128 kb on + strand, within PP_0778at 896.128 kb on + strand, within PP_0778at 896.129 kb on - strand, within PP_0778at 896.129 kb on - strand, within PP_0778at 896.129 kb on - strand, within PP_0778at 896.129 kb on - strand, within PP_0778at 896.134 kb on - strand, within PP_0778at 896.134 kb on - strand, within PP_0778at 896.134 kb on - strand, within PP_0778at 896.134 kb on - strand, within PP_0778at 896.391 kb on - strandat 896.393 kb on + strandat 896.393 kb on + strandat 896.393 kb on + strandat 896.394 kb on - strandat 896.394 kb on - strandat 896.394 kb on - strandat 896.394 kb on - strandat 896.394 kb on - strandat 896.394 kb on - strandat 896.394 kb on - strandat 896.394 kb on - strandat 896.397 kb on + strandat 896.397 kb on + strandat 896.398 kb on - strandat 896.408 kb on + strandat 896.409 kb on - strandat 896.409 kb on - strandat 896.445 kb on + strandat 896.466 kb on + strandat 896.466 kb on + strandat 896.467 kb on - strandat 896.467 kb on - strandat 896.467 kb on - strandat 896.508 kb on - strandat 896.508 kb on - strandat 896.508 kb on - strandat 896.536 kb on + strandat 896.566 kb on + strandat 896.567 kb on - strandat 896.567 kb on - strandat 896.667 kb on + strandat 896.667 kb on + strandat 896.668 kb on - strandat 896.827 kb on + strand, within PP_0779at 896.828 kb on - strand, within PP_0779at 896.962 kb on + strand, within PP_0779at 896.962 kb on + strand, within PP_0779at 896.963 kb on - strand, within PP_0779at 896.963 kb on - strand, within PP_0779at 896.963 kb on - strand, within PP_0779at 897.144 kb on + strand, within PP_0779at 897.194 kb on - strand, within PP_0779at 897.229 kb on + strand, within PP_0779at 897.229 kb on + strand, within PP_0779at 897.230 kb on - strand, within PP_0779at 897.230 kb on - strand, within PP_0779at 897.231 kb on + strand, within PP_0779at 897.231 kb on + strand, within PP_0779at 897.231 kb on + strand, within PP_0779at 897.232 kb on - strand, within PP_0779at 897.232 kb on - strand, within PP_0779at 897.232 kb on - strand, within PP_0779at 897.232 kb on - strand, within PP_0779at 897.292 kb on + strand, within PP_0779at 897.292 kb on + strand, within PP_0779at 897.292 kb on + strand, within PP_0779at 897.292 kb on + strand, within PP_0779at 897.293 kb on - strand, within PP_0779at 897.325 kb on + strandat 897.325 kb on + strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.326 kb on - strandat 897.326 kb on - strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.326 kb on - strand, within PP_0779at 897.406 kb on + strand, within PP_0779at 897.731 kb on + strand, within PP_0779at 897.731 kb on + strand, within PP_0779at 897.833 kb on + strandat 897.833 kb on + strandat 897.833 kb on + strandat 897.833 kb on + strandat 897.910 kb on + strandat 897.911 kb on - strandat 897.979 kb on - strandat 898.329 kb on - strand, within PP_0781at 898.329 kb on - strand, within PP_0781at 898.329 kb on - strand, within PP_0781at 898.483 kb on + strandat 898.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-2
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895,588 + PP_0778 0.31 -1.7
895,588 + PP_0778 0.31 -3.6
895,589 - PP_0778 0.31 +1.6
895,589 - PP_0778 0.31 +0.8
895,711 + PP_0778 0.41 +1.2
895,722 + PP_0778 0.42 -1.4
895,981 + PP_0778 0.64 -1.7
895,981 + PP_0778 0.64 -0.4
895,981 + PP_0778 0.64 -1.2
895,982 - PP_0778 0.64 +0.6
895,982 - PP_0778 0.64 -3.3
896,017 + PP_0778 0.67 -1.5
896,018 - PP_0778 0.67 -2.5
896,018 - PP_0778 0.67 -0.9
896,029 + PP_0778 0.68 +0.1
896,029 + PP_0778 0.68 +0.4
896,128 + PP_0778 0.76 +0.0
896,128 + PP_0778 0.76 -2.8
896,128 + PP_0778 0.76 -0.3
896,129 - PP_0778 0.76 -3.0
896,129 - PP_0778 0.76 -0.3
896,129 - PP_0778 0.76 -2.1
896,129 - PP_0778 0.76 +1.0
896,134 - PP_0778 0.76 +0.3
896,134 - PP_0778 0.76 +1.1
896,134 - PP_0778 0.76 -0.8
896,134 - PP_0778 0.76 -1.3
896,391 - -1.7
896,393 + -1.3
896,393 + -3.1
896,393 + +0.3
896,394 - -1.9
896,394 - +2.8
896,394 - -1.5
896,394 - +0.2
896,394 - -0.4
896,394 - +1.3
896,394 - +3.5
896,394 - +0.9
896,397 + -0.5
896,397 + -0.3
896,398 - -0.3
896,408 + -0.2
896,409 - -1.5
896,409 - +0.3
896,445 + -3.2
896,466 + -2.8
896,466 + -2.0
896,467 - +1.3
896,467 - +0.3
896,467 - -1.4
896,508 - -0.3
896,508 - +1.1
896,508 - +0.2
896,536 + -1.0
896,566 + -2.8
896,567 - +1.0
896,567 - +0.9
896,667 + +0.2
896,667 + -1.2
896,668 - +0.9
896,827 + PP_0779 0.19 +0.8
896,828 - PP_0779 0.19 +2.2
896,962 + PP_0779 0.29 -0.9
896,962 + PP_0779 0.29 +0.1
896,963 - PP_0779 0.29 +2.4
896,963 - PP_0779 0.29 +1.2
896,963 - PP_0779 0.29 +2.8
897,144 + PP_0779 0.43 +1.4
897,194 - PP_0779 0.47 +0.8
897,229 + PP_0779 0.49 -1.2
897,229 + PP_0779 0.49 -2.1
897,230 - PP_0779 0.49 +0.5
897,230 - PP_0779 0.49 -0.1
897,231 + PP_0779 0.49 -1.8
897,231 + PP_0779 0.49 +1.4
897,231 + PP_0779 0.49 +0.6
897,232 - PP_0779 0.49 -0.8
897,232 - PP_0779 0.49 +0.5
897,232 - PP_0779 0.49 +0.0
897,232 - PP_0779 0.49 +1.9
897,292 + PP_0779 0.54 +2.0
897,292 + PP_0779 0.54 -1.1
897,292 + PP_0779 0.54 +0.0
897,292 + PP_0779 0.54 -0.1
897,293 - PP_0779 0.54 -2.8
897,325 + -0.3
897,325 + PP_0779 0.56 -1.0
897,326 - PP_0779 0.56 -0.3
897,326 - +3.3
897,326 - PP_0779 0.56 +0.0
897,326 - PP_0779 0.56 -1.5
897,326 - PP_0779 0.56 +1.9
897,326 - PP_0779 0.56 -0.2
897,326 - PP_0779 0.56 +1.3
897,326 - PP_0779 0.56 +0.9
897,406 + PP_0779 0.62 +0.8
897,731 + PP_0779 0.87 +3.1
897,731 + PP_0779 0.87 +0.6
897,833 + +0.4
897,833 + -0.1
897,833 + +0.8
897,833 + +2.8
897,910 + -0.0
897,911 - -1.3
897,979 - -1.9
898,329 - PP_0781 0.63 -1.7
898,329 - PP_0781 0.63 -3.2
898,329 - PP_0781 0.63 +0.2
898,483 + +0.5
898,901 - +1.4

Or see this region's nucleotide sequence