Strain Fitness in Pseudomonas putida KT2440 around PP_0668

Experiment: Tetrahymena sp., Mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0666 and PP_0667 are separated by 170 nucleotidesPP_0667 and PP_0668 overlap by 4 nucleotidesPP_0668 and PP_0669 are separated by 90 nucleotides PP_0666: PP_0666 - conserved protein of unknown function, at 774,829 to 775,191 _0666 PP_0667: PP_0667 - RNA polymerase sigma-70 factor, ECF subfamily, at 775,362 to 775,898 _0667 PP_0668: PP_0668 - putative Transmembrane sensor, at 775,895 to 776,860 _0668 PP_0669: PP_0669 - Outer membrane ferric siderophore receptor, at 776,951 to 779,383 _0669 Position (kb) 775 776 777Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 775.066 kb on + strand, within PP_0666at 775.066 kb on + strand, within PP_0666at 775.066 kb on + strand, within PP_0666at 775.067 kb on - strand, within PP_0666at 775.067 kb on - strand, within PP_0666at 775.136 kb on - strand, within PP_0666at 775.225 kb on + strandat 775.413 kb on + strandat 775.414 kb on - strandat 775.498 kb on + strand, within PP_0667at 775.557 kb on + strand, within PP_0667at 775.558 kb on - strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.569 kb on - strand, within PP_0667at 775.727 kb on + strand, within PP_0667at 775.727 kb on + strand, within PP_0667at 775.728 kb on - strand, within PP_0667at 775.833 kb on + strand, within PP_0667at 775.834 kb on - strand, within PP_0667at 775.847 kb on + strandat 775.847 kb on + strandat 775.847 kb on + strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.851 kb on + strandat 775.851 kb on + strandat 775.851 kb on + strandat 775.851 kb on + strandat 775.852 kb on - strandat 775.852 kb on - strandat 775.852 kb on - strandat 776.043 kb on - strand, within PP_0668at 776.047 kb on - strand, within PP_0668at 776.047 kb on - strand, within PP_0668at 776.047 kb on - strand, within PP_0668at 776.246 kb on + strandat 776.366 kb on + strand, within PP_0668at 776.499 kb on + strand, within PP_0668at 776.500 kb on - strand, within PP_0668at 776.752 kb on + strand, within PP_0668at 776.753 kb on - strand, within PP_0668at 776.824 kb on + strandat 776.825 kb on - strandat 776.920 kb on + strandat 776.920 kb on + strandat 776.920 kb on + strandat 776.921 kb on - strandat 776.921 kb on - strandat 776.921 kb on - strandat 776.921 kb on - strandat 776.921 kb on - strandat 777.009 kb on + strandat 777.202 kb on - strand, within PP_0669at 777.364 kb on + strand, within PP_0669at 777.375 kb on - strand, within PP_0669at 777.375 kb on - strand, within PP_0669at 777.479 kb on - strand, within PP_0669at 777.498 kb on + strand, within PP_0669at 777.498 kb on + strand, within PP_0669at 777.499 kb on - strand, within PP_0669at 777.499 kb on - strand, within PP_0669at 777.499 kb on - strand, within PP_0669at 777.499 kb on - strand, within PP_0669at 777.624 kb on - strand, within PP_0669at 777.634 kb on + strand, within PP_0669at 777.662 kb on + strand, within PP_0669at 777.716 kb on - strand, within PP_0669at 777.807 kb on - strand, within PP_0669at 777.807 kb on - strand, within PP_0669

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-2
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775,066 + PP_0666 0.65 -0.5
775,066 + PP_0666 0.65 +0.1
775,066 + PP_0666 0.65 -1.9
775,067 - PP_0666 0.66 +0.7
775,067 - PP_0666 0.66 -0.9
775,136 - PP_0666 0.85 +0.4
775,225 + +0.9
775,413 + -0.7
775,414 - +0.6
775,498 + PP_0667 0.25 +1.0
775,557 + PP_0667 0.36 +1.3
775,558 - PP_0667 0.36 -3.2
775,568 + PP_0667 0.38 -0.4
775,568 + PP_0667 0.38 -1.7
775,568 + PP_0667 0.38 +0.4
775,568 + PP_0667 0.38 -3.4
775,568 + PP_0667 0.38 -0.6
775,568 + PP_0667 0.38 +0.5
775,569 - PP_0667 0.39 +0.6
775,727 + PP_0667 0.68 +1.3
775,727 + PP_0667 0.68 +1.4
775,728 - PP_0667 0.68 +1.6
775,833 + PP_0667 0.88 -0.9
775,834 - PP_0667 0.88 +0.1
775,847 + -0.7
775,847 + +1.8
775,847 + -1.0
775,848 - -2.2
775,848 - +0.0
775,848 - +0.6
775,848 - -1.6
775,848 - -0.4
775,848 - -0.7
775,851 + +0.3
775,851 + -0.0
775,851 + -2.5
775,851 + +0.9
775,852 - +0.2
775,852 - -1.2
775,852 - -0.9
776,043 - PP_0668 0.15 -0.1
776,047 - PP_0668 0.16 -0.1
776,047 - PP_0668 0.16 -0.0
776,047 - PP_0668 0.16 +0.7
776,246 + -0.0
776,366 + PP_0668 0.49 -1.7
776,499 + PP_0668 0.63 -4.1
776,500 - PP_0668 0.63 -1.4
776,752 + PP_0668 0.89 +0.0
776,753 - PP_0668 0.89 -0.2
776,824 + +0.9
776,825 - -3.0
776,920 + -1.2
776,920 + +0.2
776,920 + +1.4
776,921 - -2.8
776,921 - -1.3
776,921 - -1.9
776,921 - -1.6
776,921 - +0.6
777,009 + -2.5
777,202 - PP_0669 0.10 -2.3
777,364 + PP_0669 0.17 +0.8
777,375 - PP_0669 0.17 -2.1
777,375 - PP_0669 0.17 -1.2
777,479 - PP_0669 0.22 -0.7
777,498 + PP_0669 0.22 -0.2
777,498 + PP_0669 0.22 +0.5
777,499 - PP_0669 0.23 +1.3
777,499 - PP_0669 0.23 -0.3
777,499 - PP_0669 0.23 +0.8
777,499 - PP_0669 0.23 -1.7
777,624 - PP_0669 0.28 +1.3
777,634 + PP_0669 0.28 -0.1
777,662 + PP_0669 0.29 -0.3
777,716 - PP_0669 0.31 -0.5
777,807 - PP_0669 0.35 +0.5
777,807 - PP_0669 0.35 +2.2

Or see this region's nucleotide sequence