Strain Fitness in Pseudomonas putida KT2440 around PP_0659

Experiment: Tetrahymena sp., Mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0658 and PP_0659 are separated by 167 nucleotidesPP_0659 and PP_0660 are separated by 142 nucleotides PP_0658: PP_0658 - Homocysteine S-methyltransferase family protein, at 765,406 to 766,341 _0658 PP_0659: PP_0659 - Cystathionine gamma-synthase, at 766,509 to 767,780 _0659 PP_0660: PP_0660 - S-methyl-L-methionine transporter, at 767,923 to 769,362 _0660 Position (kb) 766 767 768Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 765.622 kb on + strand, within PP_0658at 765.622 kb on + strand, within PP_0658at 765.622 kb on + strand, within PP_0658at 765.622 kb on + strand, within PP_0658at 765.622 kb on + strand, within PP_0658at 765.622 kb on + strand, within PP_0658at 765.623 kb on - strand, within PP_0658at 765.623 kb on - strand, within PP_0658at 765.623 kb on - strand, within PP_0658at 765.623 kb on - strand, within PP_0658at 765.623 kb on - strand, within PP_0658at 765.623 kb on - strand, within PP_0658at 765.623 kb on - strand, within PP_0658at 765.623 kb on - strand, within PP_0658at 765.623 kb on - strand, within PP_0658at 765.623 kb on - strand, within PP_0658at 765.623 kb on - strand, within PP_0658at 765.623 kb on - strand, within PP_0658at 765.623 kb on - strand, within PP_0658at 765.629 kb on + strand, within PP_0658at 765.629 kb on + strand, within PP_0658at 765.720 kb on + strand, within PP_0658at 765.721 kb on - strand, within PP_0658at 766.056 kb on + strand, within PP_0658at 766.056 kb on + strand, within PP_0658at 766.057 kb on - strand, within PP_0658at 766.057 kb on - strand, within PP_0658at 766.390 kb on - strandat 766.447 kb on + strandat 766.448 kb on - strandat 766.448 kb on - strandat 766.448 kb on - strandat 766.449 kb on + strandat 766.449 kb on + strandat 766.449 kb on + strandat 766.450 kb on - strandat 766.450 kb on - strandat 766.450 kb on - strandat 766.450 kb on - strandat 766.480 kb on + strandat 766.481 kb on - strandat 766.481 kb on - strandat 766.585 kb on + strandat 766.585 kb on + strandat 766.585 kb on + strandat 766.586 kb on - strandat 766.586 kb on - strandat 766.586 kb on - strandat 766.586 kb on - strandat 766.596 kb on + strandat 766.596 kb on + strandat 766.596 kb on + strandat 766.597 kb on - strandat 766.597 kb on - strandat 766.597 kb on - strandat 766.635 kb on + strandat 766.636 kb on - strandat 766.636 kb on - strandat 766.642 kb on - strand, within PP_0659at 766.642 kb on - strand, within PP_0659at 766.662 kb on + strand, within PP_0659at 766.663 kb on - strand, within PP_0659at 766.663 kb on - strand, within PP_0659at 766.698 kb on + strand, within PP_0659at 766.699 kb on - strand, within PP_0659at 766.863 kb on + strand, within PP_0659at 766.863 kb on + strand, within PP_0659at 766.863 kb on + strand, within PP_0659at 766.863 kb on + strand, within PP_0659at 766.863 kb on + strand, within PP_0659at 766.864 kb on - strand, within PP_0659at 766.864 kb on - strand, within PP_0659at 766.864 kb on - strand, within PP_0659at 766.932 kb on - strand, within PP_0659at 766.986 kb on + strand, within PP_0659at 766.986 kb on + strand, within PP_0659at 766.987 kb on - strand, within PP_0659at 767.291 kb on + strand, within PP_0659at 767.291 kb on + strand, within PP_0659at 767.353 kb on - strand, within PP_0659at 767.353 kb on - strand, within PP_0659at 767.353 kb on - strand, within PP_0659at 767.388 kb on + strand, within PP_0659at 767.517 kb on + strand, within PP_0659at 767.517 kb on + strand, within PP_0659at 767.517 kb on + strand, within PP_0659at 767.517 kb on + strand, within PP_0659at 767.518 kb on - strand, within PP_0659at 767.518 kb on - strand, within PP_0659at 767.518 kb on - strand, within PP_0659at 767.559 kb on + strand, within PP_0659at 767.559 kb on + strand, within PP_0659at 767.559 kb on + strand, within PP_0659at 767.559 kb on + strand, within PP_0659at 767.559 kb on + strand, within PP_0659at 767.559 kb on + strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.791 kb on + strandat 767.792 kb on - strandat 767.792 kb on - strandat 767.842 kb on + strandat 767.843 kb on - strandat 767.886 kb on + strandat 767.887 kb on - strandat 767.946 kb on + strandat 767.946 kb on + strandat 767.946 kb on + strandat 767.947 kb on - strandat 767.947 kb on - strandat 767.947 kb on - strandat 767.947 kb on - strandat 767.980 kb on - strandat 768.023 kb on + strandat 768.023 kb on + strandat 768.023 kb on + strandat 768.024 kb on - strandat 768.024 kb on - strandat 768.094 kb on + strand, within PP_0660at 768.094 kb on + strand, within PP_0660at 768.094 kb on + strand, within PP_0660at 768.094 kb on + strand, within PP_0660at 768.095 kb on - strand, within PP_0660at 768.095 kb on - strand, within PP_0660at 768.095 kb on - strand, within PP_0660at 768.095 kb on - strand, within PP_0660at 768.099 kb on - strand, within PP_0660at 768.099 kb on - strand, within PP_0660at 768.118 kb on + strand, within PP_0660at 768.118 kb on + strand, within PP_0660at 768.119 kb on - strand, within PP_0660at 768.119 kb on - strand, within PP_0660at 768.119 kb on - strand, within PP_0660at 768.152 kb on + strand, within PP_0660at 768.184 kb on + strand, within PP_0660at 768.185 kb on - strand, within PP_0660at 768.217 kb on + strand, within PP_0660at 768.218 kb on - strand, within PP_0660at 768.218 kb on - strand, within PP_0660at 768.235 kb on + strand, within PP_0660at 768.236 kb on - strand, within PP_0660at 768.367 kb on - strand, within PP_0660at 768.710 kb on + strand, within PP_0660

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-2
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765,622 + PP_0658 0.23 -0.0
765,622 + PP_0658 0.23 +1.4
765,622 + PP_0658 0.23 -1.8
765,622 + PP_0658 0.23 -0.9
765,622 + PP_0658 0.23 -1.8
765,622 + PP_0658 0.23 +1.0
765,623 - PP_0658 0.23 -0.3
765,623 - PP_0658 0.23 -0.9
765,623 - PP_0658 0.23 +0.8
765,623 - PP_0658 0.23 +0.2
765,623 - PP_0658 0.23 -0.0
765,623 - PP_0658 0.23 +2.4
765,623 - PP_0658 0.23 -1.7
765,623 - PP_0658 0.23 +0.8
765,623 - PP_0658 0.23 -0.4
765,623 - PP_0658 0.23 -2.1
765,623 - PP_0658 0.23 +0.6
765,623 - PP_0658 0.23 -2.5
765,623 - PP_0658 0.23 -0.4
765,629 + PP_0658 0.24 +0.5
765,629 + PP_0658 0.24 +0.6
765,720 + PP_0658 0.34 +0.4
765,721 - PP_0658 0.34 +0.6
766,056 + PP_0658 0.69 +1.0
766,056 + PP_0658 0.69 +0.8
766,057 - PP_0658 0.70 -0.9
766,057 - PP_0658 0.70 +1.7
766,390 - -3.0
766,447 + +1.6
766,448 - +0.1
766,448 - +0.9
766,448 - +0.6
766,449 + +0.4
766,449 + +0.0
766,449 + +0.9
766,450 - -1.7
766,450 - -0.7
766,450 - -1.5
766,450 - -0.4
766,480 + -3.0
766,481 - +2.1
766,481 - -0.2
766,585 + +0.2
766,585 + +1.3
766,585 + +4.0
766,586 - +1.2
766,586 - -0.4
766,586 - -0.5
766,586 - +2.0
766,596 + -0.1
766,596 + +1.9
766,596 + +1.7
766,597 - +1.0
766,597 - -3.8
766,597 - -2.5
766,635 + -1.7
766,636 - +1.2
766,636 - -4.1
766,642 - PP_0659 0.10 +0.7
766,642 - PP_0659 0.10 -1.2
766,662 + PP_0659 0.12 +0.0
766,663 - PP_0659 0.12 -3.0
766,663 - PP_0659 0.12 +1.2
766,698 + PP_0659 0.15 +1.0
766,699 - PP_0659 0.15 +0.6
766,863 + PP_0659 0.28 -1.1
766,863 + PP_0659 0.28 +0.3
766,863 + PP_0659 0.28 -1.1
766,863 + PP_0659 0.28 -1.8
766,863 + PP_0659 0.28 +1.1
766,864 - PP_0659 0.28 -0.9
766,864 - PP_0659 0.28 +2.2
766,864 - PP_0659 0.28 +0.8
766,932 - PP_0659 0.33 -0.6
766,986 + PP_0659 0.38 +1.3
766,986 + PP_0659 0.38 +0.8
766,987 - PP_0659 0.38 -3.4
767,291 + PP_0659 0.61 +1.7
767,291 + PP_0659 0.61 -0.0
767,353 - PP_0659 0.66 +1.0
767,353 - PP_0659 0.66 +0.3
767,353 - PP_0659 0.66 +0.9
767,388 + PP_0659 0.69 -0.3
767,517 + PP_0659 0.79 +0.9
767,517 + PP_0659 0.79 -0.6
767,517 + PP_0659 0.79 +1.7
767,517 + PP_0659 0.79 +0.6
767,518 - PP_0659 0.79 -0.1
767,518 - PP_0659 0.79 +2.3
767,518 - PP_0659 0.79 +2.1
767,559 + PP_0659 0.83 +1.1
767,559 + PP_0659 0.83 -1.2
767,559 + PP_0659 0.83 +1.2
767,559 + PP_0659 0.83 -0.2
767,559 + PP_0659 0.83 -0.9
767,559 + PP_0659 0.83 +1.2
767,560 - PP_0659 0.83 +0.8
767,560 - PP_0659 0.83 +0.7
767,560 - PP_0659 0.83 +1.0
767,560 - PP_0659 0.83 +4.4
767,560 - PP_0659 0.83 -0.3
767,560 - PP_0659 0.83 +2.2
767,560 - PP_0659 0.83 -2.3
767,560 - PP_0659 0.83 -0.3
767,560 - PP_0659 0.83 +0.3
767,560 - PP_0659 0.83 -2.3
767,791 + -0.2
767,792 - -3.9
767,792 - +1.7
767,842 + -1.6
767,843 - -1.5
767,886 + -0.8
767,887 - +1.9
767,946 + +0.0
767,946 + +0.4
767,946 + +1.4
767,947 - +0.1
767,947 - -1.6
767,947 - +2.3
767,947 - +0.2
767,980 - +1.0
768,023 + -3.6
768,023 + +1.2
768,023 + -2.3
768,024 - +1.4
768,024 - -0.0
768,094 + PP_0660 0.12 -0.7
768,094 + PP_0660 0.12 +0.8
768,094 + PP_0660 0.12 +1.1
768,094 + PP_0660 0.12 +1.5
768,095 - PP_0660 0.12 -1.4
768,095 - PP_0660 0.12 +1.4
768,095 - PP_0660 0.12 -0.7
768,095 - PP_0660 0.12 -0.7
768,099 - PP_0660 0.12 -2.6
768,099 - PP_0660 0.12 +1.6
768,118 + PP_0660 0.14 +0.9
768,118 + PP_0660 0.14 +0.8
768,119 - PP_0660 0.14 +0.2
768,119 - PP_0660 0.14 +2.1
768,119 - PP_0660 0.14 +1.2
768,152 + PP_0660 0.16 -1.4
768,184 + PP_0660 0.18 -0.5
768,185 - PP_0660 0.18 +1.7
768,217 + PP_0660 0.20 +1.4
768,218 - PP_0660 0.20 -1.3
768,218 - PP_0660 0.20 +0.8
768,235 + PP_0660 0.22 +0.9
768,236 - PP_0660 0.22 -0.7
768,367 - PP_0660 0.31 +1.4
768,710 + PP_0660 0.55 -3.1

Or see this region's nucleotide sequence