Strain Fitness in Pseudomonas putida KT2440 around PP_0636

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
743,385	+				+0.2
743,425	+				-1.7
743,450	+				-0.5
743,451	-				-1.9
743,451	-				-0.3
743,454	+				-0.9
743,454	+				-0.2
743,490	+				+0.2
743,490	+				+0.7
743,490	+				-0.5
743,491	-				-2.2
743,491	-				-1.9
743,491	-				+0.2
743,521	+				+0.5
743,522	-				+2.6
743,522	-				+0.6
743,552	+				-1.0
743,553	-				-1.3
743,569	+				+0.2
743,570	-				-0.4
743,596	+				-1.4
743,597	-				-2.0
743,612	+				-1.0
743,612	+				-2.2
743,612	+				-2.2
743,612	+				+0.7
743,616	+				-3.4
743,616	+				+0.3
743,616	+				+1.7
743,616	+				+2.1
743,616	+				+1.5
743,617	-				+0.5
743,617	-				+0.8
743,678	+		PP_0636	0.11	+0.1
743,679	-		PP_0636	0.11	-1.8
743,679	-		PP_0636	0.11	-1.3
743,679	-		PP_0636	0.11	+1.0
743,679	-		PP_0636	0.11	+0.6
743,706	+		PP_0636	0.15	+2.2
743,769	+		PP_0636	0.23	-0.2
743,769	+		PP_0636	0.23	+2.0
743,848	+		PP_0636	0.34	+1.6
743,876	-		PP_0636	0.38	+2.1
743,882	-		PP_0636	0.39	+0.9
743,882	-		PP_0636	0.39	+1.1
743,908	+		PP_0636	0.42	+0.9
743,922	+		PP_0636	0.44	-1.4
743,922	+		PP_0636	0.44	-2.5
743,922	+				-0.0
743,923	-		PP_0636	0.44	+0.1
743,967	+		PP_0636	0.50	+1.2
743,967	+		PP_0636	0.50	+0.2
743,968	-		PP_0636	0.50	-0.2
743,968	-		PP_0636	0.50	+0.1
743,968	-		PP_0636	0.50	+2.3
743,970	+		PP_0636	0.51	+1.0
743,987	+		PP_0636	0.53	-1.1
743,988	-		PP_0636	0.53	-0.1
743,988	-		PP_0636	0.53	-1.2
744,066	+		PP_0636	0.64	+1.3
744,088	+		PP_0636	0.67	+1.5
744,094	+		PP_0636	0.67	-0.9
744,207	+		PP_0636	0.83	+1.4
744,208	-		PP_0636	0.83	-0.0
744,308	+				+0.7
744,309	-				+1.2
744,309	-				-0.9
744,369	+				+0.9
744,369	+				+0.3
744,380	-				-0.4
744,380	-				-0.8
744,399	+				+1.7
744,400	-				-1.2
744,455	-				+1.2
744,475	-				-0.3
744,532	-				+1.1
744,552	+				+0.9
744,552	+				-2.6
744,572	+				+1.7
744,572	+				-0.9
744,671	-				+1.8
744,729	+				+1.2
744,733	-				+0.3
744,785	-				-1.3
744,888	+				-0.2
744,907	-				-0.1
744,907	-				+0.8
744,916	+				+1.0
744,916	+				+1.6
744,945	-				+0.5