Experiment: Tetrahymena sp., Mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5447 and PP_0629 are separated by 86 nucleotides PP_0629 and PP_0630 are separated by 111 nucleotides PP_0630 and PP_0631 overlap by 4 nucleotides PP_0631 and PP_0632 overlap by 1 nucleotides
PP_5447: PP_5447 - conserved membrane protein of unknown function, at 736,392 to 736,823
_5447
PP_0629: PP_0629 - conserved membrane protein of unknown function, at 736,910 to 737,617
_0629
PP_0630: PP_0630 - DNA gyrase inhibitor YacG, at 737,729 to 737,929
_0630
PP_0631: PP_0631 - Dephospho-CoA kinase, at 737,926 to 738,549
_0631
PP_0632: PP_0632 - leader peptidase/N-methyltransferase, at 738,549 to 739,415
_0632
Position (kb) 737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 736.761 kb on + strand, within PP_5447 at 736.761 kb on + strand, within PP_5447 at 736.794 kb on + strand at 736.892 kb on - strand at 736.892 kb on - strand at 736.903 kb on + strand at 736.903 kb on + strand at 736.925 kb on - strand at 736.925 kb on - strand at 736.988 kb on + strand, within PP_0629 at 736.989 kb on - strand, within PP_0629 at 737.135 kb on + strand, within PP_0629 at 737.144 kb on - strand, within PP_0629 at 737.297 kb on - strand, within PP_0629 at 737.314 kb on - strand, within PP_0629 at 737.314 kb on - strand, within PP_0629 at 737.354 kb on - strand, within PP_0629 at 737.526 kb on + strand, within PP_0629 at 737.526 kb on + strand, within PP_0629 at 737.526 kb on + strand, within PP_0629 at 737.582 kb on + strand at 737.714 kb on + strand at 737.714 kb on + strand at 737.714 kb on + strand at 737.714 kb on + strand at 737.715 kb on - strand at 737.715 kb on - strand at 737.715 kb on - strand at 737.757 kb on + strand, within PP_0630 at 738.572 kb on - strand at 738.572 kb on - strand at 738.572 kb on - strand at 738.572 kb on - strand at 738.581 kb on - strand at 738.583 kb on - strand at 738.583 kb on - strand at 738.628 kb on + strand at 738.628 kb on + strand at 738.628 kb on + strand at 738.829 kb on + strand, within PP_0632 at 738.829 kb on + strand, within PP_0632
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-2 remove 736,761 + PP_5447 0.85 +0.7 736,761 + PP_5447 0.85 +1.4 736,794 + -1.5 736,892 - +2.3 736,892 - +1.2 736,903 + +0.9 736,903 + -2.0 736,925 - +1.7 736,925 - +0.8 736,988 + PP_0629 0.11 +0.0 736,989 - PP_0629 0.11 +1.1 737,135 + PP_0629 0.32 +0.3 737,144 - PP_0629 0.33 -1.4 737,297 - PP_0629 0.55 +0.5 737,314 - PP_0629 0.57 +0.3 737,314 - PP_0629 0.57 -0.6 737,354 - PP_0629 0.63 +1.2 737,526 + PP_0629 0.87 -0.3 737,526 + PP_0629 0.87 +1.4 737,526 + PP_0629 0.87 -1.2 737,582 + +1.9 737,714 + +3.0 737,714 + +1.3 737,714 + +0.0 737,714 + +2.1 737,715 - -3.4 737,715 - +0.0 737,715 - +2.1 737,757 + PP_0630 0.14 -2.7 738,572 - +0.9 738,572 - -2.8 738,572 - -2.6 738,572 - -1.2 738,581 - -2.1 738,583 - -0.8 738,583 - +0.7 738,628 + +1.5 738,628 + +0.0 738,628 + +0.5 738,829 + PP_0632 0.32 +0.3 738,829 + PP_0632 0.32 +1.2
Or see this region's nucleotide sequence