Strain Fitness in Pseudomonas putida KT2440 around PP_0542

Experiment: Tetrahymena sp., Mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0540 and PP_0541 are separated by 217 nucleotidesPP_0541 and PP_0542 are separated by 107 nucleotidesPP_0542 and PP_0543 are separated by 8 nucleotides PP_0540: PP_0540 - conserved inner membrane protein, at 626,545 to 627,192 _0540 PP_0541: PP_0541 - Acetyltransferase, GNAT family, at 627,410 to 627,868 _0541 PP_0542: PP_0542 - ethanolamine ammonia-lyase, beta-subunit, at 627,976 to 628,794 _0542 PP_0543: PP_0543 - ethanolamine ammonia-lyase, alpha-subunit, at 628,803 to 630,197 _0543 Position (kb) 627 628 629Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 627.067 kb on + strand, within PP_0540at 627.068 kb on - strand, within PP_0540at 627.068 kb on - strand, within PP_0540at 627.111 kb on - strand, within PP_0540at 627.111 kb on - strand, within PP_0540at 627.125 kb on + strand, within PP_0540at 627.125 kb on + strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.149 kb on + strandat 627.194 kb on + strandat 627.194 kb on + strandat 627.194 kb on + strandat 627.194 kb on + strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.218 kb on - strandat 627.218 kb on - strandat 627.271 kb on - strandat 627.272 kb on + strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.278 kb on + strandat 627.307 kb on - strandat 627.317 kb on + strandat 627.318 kb on - strandat 627.322 kb on + strandat 627.323 kb on - strandat 627.323 kb on - strandat 627.323 kb on - strandat 627.331 kb on - strandat 627.380 kb on + strandat 627.380 kb on + strandat 627.380 kb on + strandat 627.381 kb on - strandat 627.381 kb on - strandat 627.381 kb on - strandat 627.381 kb on - strandat 627.436 kb on - strandat 627.436 kb on - strandat 627.436 kb on - strandat 627.609 kb on - strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.616 kb on + strand, within PP_0541at 627.617 kb on - strand, within PP_0541at 627.617 kb on - strand, within PP_0541at 627.617 kb on - strand, within PP_0541at 627.657 kb on + strand, within PP_0541at 627.658 kb on - strand, within PP_0541at 627.658 kb on - strand, within PP_0541at 627.658 kb on - strand, within PP_0541at 627.720 kb on + strand, within PP_0541at 627.720 kb on + strand, within PP_0541at 627.721 kb on - strand, within PP_0541at 627.721 kb on - strand, within PP_0541at 627.721 kb on - strand, within PP_0541at 627.780 kb on + strand, within PP_0541at 627.807 kb on + strand, within PP_0541at 627.807 kb on + strand, within PP_0541at 627.943 kb on + strandat 627.944 kb on - strandat 628.035 kb on + strandat 628.057 kb on + strandat 628.058 kb on - strand, within PP_0542at 628.103 kb on + strand, within PP_0542at 628.103 kb on + strand, within PP_0542at 628.104 kb on - strand, within PP_0542at 628.104 kb on - strand, within PP_0542at 628.130 kb on + strand, within PP_0542at 628.202 kb on + strand, within PP_0542at 628.211 kb on + strand, within PP_0542at 628.211 kb on + strand, within PP_0542at 628.211 kb on + strand, within PP_0542at 628.212 kb on - strand, within PP_0542at 628.545 kb on - strand, within PP_0542at 628.545 kb on - strand, within PP_0542at 628.777 kb on - strandat 628.804 kb on + strandat 628.804 kb on + strandat 628.805 kb on - strandat 628.981 kb on + strand, within PP_0543at 628.982 kb on - strand, within PP_0543at 628.982 kb on - strand, within PP_0543at 629.098 kb on + strand, within PP_0543at 629.098 kb on + strand, within PP_0543at 629.099 kb on - strand, within PP_0543at 629.099 kb on - strand, within PP_0543at 629.099 kb on - strand, within PP_0543at 629.099 kb on - strand, within PP_0543at 629.185 kb on + strand, within PP_0543at 629.185 kb on + strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.186 kb on - strand, within PP_0543at 629.257 kb on + strand, within PP_0543at 629.258 kb on - strand, within PP_0543at 629.258 kb on - strand, within PP_0543at 629.338 kb on + strand, within PP_0543at 629.389 kb on + strand, within PP_0543at 629.389 kb on + strand, within PP_0543at 629.389 kb on + strand, within PP_0543at 629.390 kb on - strand, within PP_0543at 629.549 kb on - strand, within PP_0543at 629.648 kb on - strand, within PP_0543at 629.648 kb on - strand, within PP_0543

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-2
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627,067 + PP_0540 0.81 -0.9
627,068 - PP_0540 0.81 -0.3
627,068 - PP_0540 0.81 +0.1
627,111 - PP_0540 0.87 -2.0
627,111 - PP_0540 0.87 +1.7
627,125 + PP_0540 0.90 -0.3
627,125 + PP_0540 0.90 -0.2
627,126 - PP_0540 0.90 -0.5
627,126 - PP_0540 0.90 -3.6
627,126 - PP_0540 0.90 -2.2
627,126 - PP_0540 0.90 -0.2
627,126 - PP_0540 0.90 -0.5
627,126 - PP_0540 0.90 -0.4
627,126 - PP_0540 0.90 -1.5
627,149 + -0.9
627,194 + -1.2
627,194 + -0.2
627,194 + -1.2
627,194 + +0.8
627,195 - -2.4
627,195 - +1.0
627,195 - +0.6
627,195 - -2.0
627,195 - -1.6
627,218 - -2.4
627,218 - +1.0
627,271 - -0.3
627,272 + +0.6
627,273 - +1.9
627,273 - -1.4
627,273 - -1.8
627,273 - -2.6
627,273 - -0.2
627,273 - +0.4
627,278 + +2.5
627,307 - -1.2
627,317 + -0.8
627,318 - -2.7
627,322 + +1.8
627,323 - +0.0
627,323 - +0.2
627,323 - +2.3
627,331 - -1.6
627,380 + -0.2
627,380 + -0.4
627,380 + -1.0
627,381 - -1.6
627,381 - -1.3
627,381 - -2.3
627,381 - -0.1
627,436 - -2.7
627,436 - +1.2
627,436 - -0.8
627,609 - PP_0541 0.43 +0.2
627,612 + PP_0541 0.44 -0.2
627,612 + PP_0541 0.44 -2.8
627,612 + PP_0541 0.44 -0.8
627,612 + PP_0541 0.44 +2.0
627,612 + PP_0541 0.44 -1.2
627,612 + PP_0541 0.44 +1.2
627,612 + PP_0541 0.44 +0.4
627,612 + PP_0541 0.44 +0.3
627,612 + PP_0541 0.44 +0.2
627,613 - PP_0541 0.44 -0.5
627,613 - PP_0541 0.44 -1.3
627,613 - PP_0541 0.44 +0.9
627,613 - PP_0541 0.44 +0.7
627,613 - PP_0541 0.44 +0.7
627,613 - PP_0541 0.44 +0.4
627,613 - PP_0541 0.44 -1.1
627,613 - PP_0541 0.44 -1.3
627,613 - PP_0541 0.44 +1.8
627,616 + PP_0541 0.45 +0.7
627,617 - PP_0541 0.45 -0.9
627,617 - PP_0541 0.45 -0.9
627,617 - PP_0541 0.45 -2.3
627,657 + PP_0541 0.54 +0.1
627,658 - PP_0541 0.54 +0.3
627,658 - PP_0541 0.54 +0.3
627,658 - PP_0541 0.54 +1.3
627,720 + PP_0541 0.68 +0.7
627,720 + PP_0541 0.68 +1.8
627,721 - PP_0541 0.68 +0.8
627,721 - PP_0541 0.68 +0.4
627,721 - PP_0541 0.68 -0.8
627,780 + PP_0541 0.81 +1.0
627,807 + PP_0541 0.86 -0.4
627,807 + PP_0541 0.86 +1.4
627,943 + +0.2
627,944 - +2.2
628,035 + -0.3
628,057 + -2.0
628,058 - PP_0542 0.10 -2.8
628,103 + PP_0542 0.16 +2.1
628,103 + PP_0542 0.16 -1.4
628,104 - PP_0542 0.16 -0.5
628,104 - PP_0542 0.16 -2.2
628,130 + PP_0542 0.19 +0.4
628,202 + PP_0542 0.28 +1.3
628,211 + PP_0542 0.29 +1.9
628,211 + PP_0542 0.29 +1.0
628,211 + PP_0542 0.29 +1.4
628,212 - PP_0542 0.29 +0.5
628,545 - PP_0542 0.69 +1.4
628,545 - PP_0542 0.69 +1.4
628,777 - +1.8
628,804 + -3.1
628,804 + -4.2
628,805 - +0.8
628,981 + PP_0543 0.13 -0.1
628,982 - PP_0543 0.13 +0.9
628,982 - PP_0543 0.13 +1.0
629,098 + PP_0543 0.21 +0.3
629,098 + PP_0543 0.21 +1.0
629,099 - PP_0543 0.21 +0.7
629,099 - PP_0543 0.21 -1.6
629,099 - PP_0543 0.21 -0.1
629,099 - PP_0543 0.21 +0.4
629,185 + PP_0543 0.27 -0.8
629,185 + PP_0543 0.27 -0.0
629,186 - PP_0543 0.27 +1.6
629,186 - PP_0543 0.27 +2.3
629,186 - PP_0543 0.27 +1.2
629,186 - PP_0543 0.27 +2.4
629,186 - PP_0543 0.27 +1.2
629,186 - PP_0543 0.27 +0.0
629,186 - PP_0543 0.27 +0.1
629,186 - PP_0543 0.27 +1.1
629,257 + PP_0543 0.33 -0.6
629,258 - PP_0543 0.33 -0.9
629,258 - PP_0543 0.33 -2.7
629,338 + PP_0543 0.38 +1.7
629,389 + PP_0543 0.42 -4.1
629,389 + PP_0543 0.42 -2.4
629,389 + PP_0543 0.42 -0.3
629,390 - PP_0543 0.42 -1.1
629,549 - PP_0543 0.53 -0.5
629,648 - PP_0543 0.61 +0.6
629,648 - PP_0543 0.61 -2.4

Or see this region's nucleotide sequence