Experiment: Tetrahymena sp., Mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0409 and PP_0410 are separated by 10 nucleotides PP_0410 and PP_0411 are separated by 295 nucleotides
PP_0409: PP_0409 - Sensory box histidine kinase, at 496,129 to 498,516
_0409
PP_0410: PP_0410 - DNA-binding response regulator UhpA, at 498,527 to 499,156
_0410
PP_0411: PP_0411 - Polyamine ABC transporter, ATP-binding protein, at 499,452 to 500,576
_0411
Position (kb) 498
499
500 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 497.566 kb on + strand, within PP_0409 at 497.567 kb on - strand, within PP_0409 at 497.567 kb on - strand, within PP_0409 at 497.568 kb on + strand, within PP_0409 at 497.569 kb on - strand, within PP_0409 at 497.569 kb on - strand, within PP_0409 at 497.580 kb on + strand, within PP_0409 at 497.672 kb on - strand, within PP_0409 at 497.804 kb on + strand, within PP_0409 at 497.805 kb on - strand, within PP_0409 at 497.805 kb on - strand, within PP_0409 at 497.819 kb on + strand, within PP_0409 at 497.820 kb on - strand, within PP_0409 at 498.090 kb on - strand, within PP_0409 at 498.180 kb on + strand, within PP_0409 at 498.181 kb on - strand, within PP_0409 at 498.258 kb on + strand, within PP_0409 at 498.312 kb on - strand at 498.326 kb on + strand at 498.326 kb on + strand at 498.327 kb on - strand at 498.327 kb on - strand at 498.515 kb on - strand at 498.515 kb on - strand at 498.538 kb on - strand at 498.538 kb on - strand at 498.678 kb on + strand, within PP_0410 at 498.678 kb on + strand, within PP_0410 at 498.896 kb on + strand, within PP_0410 at 498.897 kb on - strand, within PP_0410 at 498.898 kb on + strand, within PP_0410 at 498.898 kb on + strand, within PP_0410 at 498.898 kb on + strand, within PP_0410 at 498.899 kb on - strand, within PP_0410 at 498.899 kb on - strand, within PP_0410 at 498.936 kb on + strand, within PP_0410 at 498.937 kb on - strand, within PP_0410 at 498.937 kb on - strand, within PP_0410 at 499.130 kb on + strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.165 kb on + strand at 499.166 kb on - strand at 499.166 kb on - strand at 499.166 kb on - strand at 499.166 kb on - strand at 499.166 kb on - strand at 499.192 kb on + strand at 499.193 kb on - strand at 499.193 kb on - strand at 499.239 kb on + strand at 499.240 kb on - strand at 499.240 kb on - strand at 499.340 kb on - strand at 499.340 kb on - strand at 499.340 kb on - strand at 499.378 kb on + strand at 499.410 kb on + strand at 499.411 kb on - strand at 499.422 kb on + strand at 499.521 kb on + strand at 499.522 kb on - strand at 499.522 kb on - strand at 499.522 kb on - strand at 499.716 kb on - strand, within PP_0411 at 499.737 kb on + strand, within PP_0411 at 499.737 kb on + strand, within PP_0411 at 499.737 kb on + strand, within PP_0411 at 499.738 kb on - strand, within PP_0411 at 499.951 kb on + strand, within PP_0411 at 499.952 kb on - strand, within PP_0411 at 500.053 kb on - strand, within PP_0411 at 500.053 kb on - strand, within PP_0411 at 500.053 kb on - strand, within PP_0411
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-2 remove 497,566 + PP_0409 0.60 +1.4 497,567 - PP_0409 0.60 -0.7 497,567 - PP_0409 0.60 -0.7 497,568 + PP_0409 0.60 +0.2 497,569 - PP_0409 0.60 +0.6 497,569 - PP_0409 0.60 +0.2 497,580 + PP_0409 0.61 +0.5 497,672 - PP_0409 0.65 -0.1 497,804 + PP_0409 0.70 +0.8 497,805 - PP_0409 0.70 +0.1 497,805 - PP_0409 0.70 -0.4 497,819 + PP_0409 0.71 +0.8 497,820 - PP_0409 0.71 +0.7 498,090 - PP_0409 0.82 +0.5 498,180 + PP_0409 0.86 +0.4 498,181 - PP_0409 0.86 +0.6 498,258 + PP_0409 0.89 +1.5 498,312 - +1.5 498,326 + -3.0 498,326 + -1.2 498,327 - -1.4 498,327 - -0.2 498,515 - +1.1 498,515 - +1.3 498,538 - -2.2 498,538 - -2.2 498,678 + PP_0410 0.24 -0.8 498,678 + PP_0410 0.24 -0.6 498,896 + PP_0410 0.59 -2.8 498,897 - PP_0410 0.59 -1.4 498,898 + PP_0410 0.59 -0.7 498,898 + PP_0410 0.59 -0.8 498,898 + PP_0410 0.59 -1.1 498,899 - PP_0410 0.59 -2.1 498,899 - PP_0410 0.59 +0.9 498,936 + PP_0410 0.65 -3.8 498,937 - PP_0410 0.65 -3.0 498,937 - PP_0410 0.65 +0.6 499,130 + -1.8 499,131 - -0.0 499,131 - +2.0 499,131 - -1.0 499,131 - +0.7 499,131 - -0.6 499,131 - -1.6 499,165 + +1.3 499,166 - -0.3 499,166 - +2.2 499,166 - -0.9 499,166 - +0.4 499,166 - +0.4 499,192 + +2.3 499,193 - -1.2 499,193 - -0.2 499,239 + +0.8 499,240 - +0.6 499,240 - -0.6 499,340 - -0.1 499,340 - +0.6 499,340 - -1.0 499,378 + +0.3 499,410 + -0.6 499,411 - -0.2 499,422 + -0.4 499,521 + -2.3 499,522 - -0.6 499,522 - -0.4 499,522 - +3.6 499,716 - PP_0411 0.23 +2.8 499,737 + PP_0411 0.25 +0.3 499,737 + PP_0411 0.25 +0.9 499,737 + PP_0411 0.25 -1.2 499,738 - PP_0411 0.25 -1.8 499,951 + PP_0411 0.44 -0.9 499,952 - PP_0411 0.44 +0.5 500,053 - PP_0411 0.53 -0.4 500,053 - PP_0411 0.53 +0.2 500,053 - PP_0411 0.53 -0.7
Or see this region's nucleotide sequence