Strain Fitness in Pseudomonas putida KT2440 around PP_0144

Experiment: Tetrahymena sp., Mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0143 and PP_0144 are separated by 93 nucleotidesPP_0144 and PP_0145 are separated by 30 nucleotides PP_0143: PP_0143 - conserved membrane protein of unknown function, at 151,081 to 152,106 _0143 PP_0144: PP_0144 - Metalloprotease, insulinase family, at 152,200 to 153,606 _0144 PP_0145: PP_0145 - Na+/Pi-cotransporter, at 153,637 to 155,295 _0145 Position (kb) 152 153 154Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 151.217 kb on + strand, within PP_0143at 151.217 kb on + strand, within PP_0143at 151.218 kb on - strand, within PP_0143at 151.292 kb on + strand, within PP_0143at 151.334 kb on + strand, within PP_0143at 151.335 kb on - strand, within PP_0143at 151.335 kb on - strand, within PP_0143at 151.340 kb on + strand, within PP_0143at 151.340 kb on + strand, within PP_0143at 151.341 kb on - strand, within PP_0143at 151.341 kb on - strand, within PP_0143at 151.408 kb on + strand, within PP_0143at 151.408 kb on + strand, within PP_0143at 151.408 kb on + strand, within PP_0143at 151.408 kb on + strand, within PP_0143at 151.409 kb on - strand, within PP_0143at 151.409 kb on - strand, within PP_0143at 151.409 kb on - strand, within PP_0143at 151.416 kb on + strand, within PP_0143at 151.715 kb on + strand, within PP_0143at 151.715 kb on + strand, within PP_0143at 151.716 kb on + strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.718 kb on + strand, within PP_0143at 151.719 kb on - strand, within PP_0143at 152.089 kb on - strandat 152.114 kb on + strandat 152.114 kb on + strandat 152.115 kb on - strandat 152.115 kb on - strandat 152.191 kb on - strandat 152.214 kb on + strandat 152.214 kb on + strandat 152.214 kb on + strandat 152.315 kb on + strandat 152.320 kb on + strandat 152.320 kb on + strandat 152.320 kb on + strandat 152.321 kb on - strandat 152.321 kb on - strandat 152.345 kb on + strand, within PP_0144at 152.345 kb on + strand, within PP_0144at 152.346 kb on - strand, within PP_0144at 152.346 kb on - strand, within PP_0144at 152.346 kb on - strand, within PP_0144at 152.346 kb on - strand, within PP_0144at 152.346 kb on - strand, within PP_0144at 152.442 kb on + strand, within PP_0144at 152.442 kb on + strand, within PP_0144at 152.442 kb on + strand, within PP_0144at 152.445 kb on - strand, within PP_0144at 152.445 kb on - strand, within PP_0144at 152.445 kb on - strand, within PP_0144at 152.445 kb on - strand, within PP_0144at 152.465 kb on + strand, within PP_0144at 152.465 kb on + strand, within PP_0144at 152.466 kb on - strand, within PP_0144at 152.466 kb on - strand, within PP_0144at 152.466 kb on - strand, within PP_0144at 152.466 kb on - strand, within PP_0144at 152.469 kb on - strand, within PP_0144at 152.691 kb on - strand, within PP_0144at 152.723 kb on + strand, within PP_0144at 152.940 kb on - strand, within PP_0144at 153.149 kb on + strand, within PP_0144at 153.149 kb on + strand, within PP_0144at 153.150 kb on - strand, within PP_0144at 153.150 kb on - strand, within PP_0144at 153.172 kb on + strand, within PP_0144at 153.172 kb on + strand, within PP_0144at 153.172 kb on + strand, within PP_0144at 153.173 kb on - strand, within PP_0144at 153.173 kb on - strand, within PP_0144at 153.306 kb on + strand, within PP_0144at 153.306 kb on + strand, within PP_0144at 153.306 kb on + strand, within PP_0144at 153.307 kb on - strand, within PP_0144at 153.485 kb on + strandat 153.527 kb on + strandat 153.527 kb on + strandat 153.528 kb on - strandat 153.528 kb on - strandat 153.704 kb on - strandat 153.710 kb on + strandat 153.710 kb on + strandat 153.710 kb on + strandat 153.710 kb on + strandat 153.710 kb on + strandat 153.710 kb on + strandat 153.710 kb on + strandat 153.710 kb on + strandat 153.710 kb on + strandat 153.710 kb on + strandat 153.711 kb on - strandat 153.711 kb on - strandat 153.711 kb on - strandat 153.720 kb on + strandat 153.720 kb on + strandat 153.721 kb on - strandat 153.769 kb on + strandat 153.769 kb on + strandat 153.786 kb on + strandat 153.977 kb on - strand, within PP_0145at 154.142 kb on + strand, within PP_0145at 154.143 kb on - strand, within PP_0145at 154.160 kb on + strand, within PP_0145at 154.161 kb on - strand, within PP_0145at 154.381 kb on + strand, within PP_0145at 154.381 kb on + strand, within PP_0145at 154.451 kb on + strand, within PP_0145at 154.452 kb on - strand, within PP_0145at 154.452 kb on - strand, within PP_0145at 154.562 kb on + strand, within PP_0145

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-2
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151,217 + PP_0143 0.13 +0.2
151,217 + PP_0143 0.13 +0.6
151,218 - PP_0143 0.13 +0.9
151,292 + PP_0143 0.21 -1.6
151,334 + PP_0143 0.25 -1.8
151,335 - PP_0143 0.25 -1.9
151,335 - PP_0143 0.25 -0.3
151,340 + PP_0143 0.25 -0.8
151,340 + PP_0143 0.25 -0.6
151,341 - PP_0143 0.25 -0.1
151,341 - PP_0143 0.25 -0.1
151,408 + PP_0143 0.32 +1.1
151,408 + PP_0143 0.32 -1.5
151,408 + PP_0143 0.32 -1.5
151,408 + PP_0143 0.32 +0.4
151,409 - PP_0143 0.32 -0.1
151,409 - PP_0143 0.32 +0.0
151,409 - PP_0143 0.32 -0.9
151,416 + PP_0143 0.33 -1.0
151,715 + PP_0143 0.62 +0.9
151,715 + PP_0143 0.62 -0.2
151,716 + PP_0143 0.62 +0.2
151,716 - PP_0143 0.62 +0.4
151,716 - PP_0143 0.62 -2.0
151,716 - PP_0143 0.62 +2.3
151,716 - PP_0143 0.62 -0.6
151,716 - PP_0143 0.62 +1.9
151,716 - PP_0143 0.62 -0.8
151,718 + PP_0143 0.62 +1.9
151,719 - PP_0143 0.62 +0.1
152,089 - -0.6
152,114 + -1.4
152,114 + +0.5
152,115 - -0.1
152,115 - -2.1
152,191 - +1.7
152,214 + -0.5
152,214 + -0.6
152,214 + +2.0
152,315 + -0.1
152,320 + +0.6
152,320 + +0.4
152,320 + +0.7
152,321 - -0.2
152,321 - +1.3
152,345 + PP_0144 0.10 +1.4
152,345 + PP_0144 0.10 +1.9
152,346 - PP_0144 0.10 +0.4
152,346 - PP_0144 0.10 +1.0
152,346 - PP_0144 0.10 -1.4
152,346 - PP_0144 0.10 +4.0
152,346 - PP_0144 0.10 -2.2
152,442 + PP_0144 0.17 -0.1
152,442 + PP_0144 0.17 +1.4
152,442 + PP_0144 0.17 +0.8
152,445 - PP_0144 0.17 +0.2
152,445 - PP_0144 0.17 -1.0
152,445 - PP_0144 0.17 -0.4
152,445 - PP_0144 0.17 +0.7
152,465 + PP_0144 0.19 +1.8
152,465 + PP_0144 0.19 -0.0
152,466 - PP_0144 0.19 +1.0
152,466 - PP_0144 0.19 +0.9
152,466 - PP_0144 0.19 -0.9
152,466 - PP_0144 0.19 +1.6
152,469 - PP_0144 0.19 +2.1
152,691 - PP_0144 0.35 -0.1
152,723 + PP_0144 0.37 +1.0
152,940 - PP_0144 0.53 +0.9
153,149 + PP_0144 0.67 +0.6
153,149 + PP_0144 0.67 -0.3
153,150 - PP_0144 0.68 -0.8
153,150 - PP_0144 0.68 -1.7
153,172 + PP_0144 0.69 +0.2
153,172 + PP_0144 0.69 -2.4
153,172 + PP_0144 0.69 -2.6
153,173 - PP_0144 0.69 +1.6
153,173 - PP_0144 0.69 -2.8
153,306 + PP_0144 0.79 +1.3
153,306 + PP_0144 0.79 +0.2
153,306 + PP_0144 0.79 -0.1
153,307 - PP_0144 0.79 +1.3
153,485 + -2.1
153,527 + +0.7
153,527 + +0.2
153,528 - +1.0
153,528 - +1.0
153,704 - -1.2
153,710 + +0.6
153,710 + +2.2
153,710 + -1.3
153,710 + +0.7
153,710 + +0.0
153,710 + +0.8
153,710 + +2.7
153,710 + +0.3
153,710 + -2.0
153,710 + +0.2
153,711 - +2.0
153,711 - -0.3
153,711 - -2.9
153,720 + -0.7
153,720 + -1.0
153,721 - +2.2
153,769 + +1.3
153,769 + +0.7
153,786 + -1.6
153,977 - PP_0145 0.20 -0.8
154,142 + PP_0145 0.30 +4.4
154,143 - PP_0145 0.31 -1.8
154,160 + PP_0145 0.32 -0.8
154,161 - PP_0145 0.32 +1.1
154,381 + PP_0145 0.45 -0.8
154,381 + PP_0145 0.45 +0.6
154,451 + PP_0145 0.49 -1.2
154,452 - PP_0145 0.49 +1.1
154,452 - PP_0145 0.49 -0.3
154,562 + PP_0145 0.56 +1.6

Or see this region's nucleotide sequence