Strain Fitness in Pseudomonas putida KT2440 around PP_0107

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
112,337	+		PP_0106	0.20	-0.1
112,337	+		PP_0106	0.20	-0.7
112,337	+		PP_0106	0.20	+0.3
112,338	-		PP_0106	0.20	+0.2
112,392	-		PP_0106	0.26	-1.3
112,487	+		PP_0106	0.36	-0.3
112,488	-		PP_0106	0.37	-3.8
112,488	-		PP_0106	0.37	-3.0
112,488	-		PP_0106	0.37	-1.3
112,488	-		PP_0106	0.37	-0.8
112,497	+		PP_0106	0.38	-1.6
112,778	-		PP_0106	0.69	+3.6
112,799	+		PP_0106	0.72	+2.4
112,799	+		PP_0106	0.72	-0.8
112,800	-		PP_0106	0.72	-0.3
112,802	+		PP_0106	0.72	-3.4
112,802	+		PP_0106	0.72	-3.3
112,802	+		PP_0106	0.72	+2.4
112,803	-		PP_0106	0.72	-0.3
112,811	+		PP_0106	0.73	-1.5
112,812	-		PP_0106	0.73	+0.3
112,814	-		PP_0106	0.73	-0.5
112,847	+		PP_0106	0.77	-2.4
112,848	-		PP_0106	0.77	-1.8
112,882	-		PP_0106	0.81	-3.0
112,991	+				-0.9
113,039	+				+1.4
113,039	+				-0.5
113,039	+				+0.8
113,040	-				-0.2
113,052	+				-0.6
113,065	-				-2.8
113,065	-				-0.3
113,139	+		PP_5427	0.28	+0.0
113,139	+		PP_5427	0.28	-1.5
113,139	+		PP_5427	0.28	+0.1
113,139	+		PP_5427	0.28	+1.3
113,139	+		PP_5427	0.28	+0.6
113,140	-		PP_5427	0.28	-3.8
113,140	-		PP_5427	0.28	+0.7
113,140	-		PP_5427	0.28	+0.8
113,140	-		PP_5427	0.28	-3.0
113,318	+				-2.6
113,318	+				+1.0
113,318	+				-1.5
113,319	-				+0.7
113,319	-				+0.8
113,323	-				-0.8
113,323	-				-2.1
113,323	-				-0.8
113,323	-				+0.9
113,325	-				-0.1
113,402	+				-2.2
113,402	+				-3.7
113,402	+				+1.2
113,403	-				+0.3
113,403	-				-1.7
113,460	+		PP_0107	0.17	+3.1
113,461	-		PP_0107	0.17	-0.2
113,461	-		PP_0107	0.17	+1.8
113,461	-		PP_0107	0.17	-2.5
113,461	-		PP_0107	0.17	-0.2
113,461	-		PP_0107	0.17	+0.3
113,461	-		PP_0107	0.17	+2.1
113,544	+		PP_0107	0.28	+2.8
113,544	+		PP_0107	0.28	-0.9
113,545	-		PP_0107	0.28	+1.1
113,545	-		PP_0107	0.28	-0.9
113,751	+		PP_0107	0.56	+0.2
113,751	+		PP_0107	0.56	+0.1
113,751	+		PP_0107	0.56	+1.6
113,752	-		PP_0107	0.56	-0.5
113,752	-		PP_0107	0.56	-2.9
113,842	+		PP_0107	0.68	+1.5
113,842	+		PP_0107	0.68	-0.5
113,958	+		PP_0107	0.84	+0.7
114,003	+				+1.4
114,003	+				+0.7
114,010	-				+1.5
114,010	-				-1.3
114,078	+				-0.5
114,079	-				+2.1
114,079	-				-2.1
114,164	-		PP_0108	0.21	-2.7
114,164	-		PP_0108	0.21	-1.0
114,171	+		PP_0108	0.22	-2.7
114,171	+		PP_0108	0.22	-0.1
114,172	-		PP_0108	0.22	+1.8
114,199	+		PP_0108	0.27	+1.8
114,415	+		PP_0108	0.64	+1.5
114,416	-		PP_0108	0.64	+1.3
114,706	+				+0.2
114,707	-				-0.5
114,707	-				-2.0
114,707	-				+1.1
114,707	-				+1.4
114,707	-				-1.2
114,708	+				+0.3
114,757	+		PP_0109	0.11	+0.4
114,757	+		PP_0109	0.11	-1.5
114,868	+		PP_0109	0.22	-1.1
114,869	-		PP_0109	0.22	+2.5
114,968	+		PP_0109	0.31	-1.0
115,002	+		PP_0109	0.34	-1.0
115,002	+		PP_0109	0.34	+0.4
115,002	+		PP_0109	0.34	+0.5
115,003	-		PP_0109	0.34	-2.0
115,003	-		PP_0109	0.34	+0.6
115,065	+		PP_0109	0.40	+0.7
115,065	+		PP_0109	0.40	-1.1