Strain Fitness in Pseudomonas putida KT2440 around PP_0072

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
81,183	-		PP_5425	0.53	-0.1
81,183	-		PP_5425	0.53	+0.2
81,205	+		PP_5425	0.64	-1.2
81,206	-		PP_5425	0.64	-0.3
81,206	-		PP_5425	0.64	-3.3
81,244	-		PP_5425	0.83	+0.5
81,244	-		PP_5425	0.83	+1.1
81,270	+				+0.2
81,271	-				-3.1
81,318	+				+1.1
81,334	+				-0.8
81,334	+				-0.5
81,368	+				-1.1
81,369	-				-0.1
81,369	-				-0.7
81,369	-				+1.0
81,391	+				-0.2
81,392	-				-0.7
81,451	+				+2.2
81,451	+				+2.7
81,452	-				-1.2
81,456	+				-0.2
81,457	-				+2.3
81,457	-				-0.7
81,505	+				-3.3
81,506	-				-0.4
81,548	-				-0.3
81,618	+				+0.6
81,636	+				+1.9
81,648	+				-0.4
81,649	-				+0.4
81,649	-				+1.6
81,673	-				+0.7
81,704	+				-1.4
81,704	+				-0.4
81,704	+				+1.5
81,705	-				+0.4
81,705	-				+1.9
81,705	-				-0.7
81,705	-				-1.5
81,737	+		PP_0071	0.14	-0.2
81,839	+		PP_0071	0.44	+0.3
81,839	+		PP_0071	0.44	+0.0
81,840	-		PP_0071	0.45	-0.3
81,840	-		PP_0071	0.45	-0.2
81,845	+		PP_0071	0.46	+0.7
81,845	+		PP_0071	0.46	+0.8
81,846	-		PP_0071	0.47	+0.8
81,846	-		PP_0071	0.47	+0.5
81,847	+		PP_0071	0.47	-0.1
81,848	-		PP_0071	0.47	+0.7
81,848	-		PP_0071	0.47	+1.1
81,848	-		PP_0071	0.47	+1.2
81,848	-		PP_0071	0.47	-0.4
81,848	-		PP_0071	0.47	-3.8
81,862	+		PP_0071	0.51	+0.4
81,969	-		PP_0071	0.83	+1.2
82,022	-				+1.7
82,047	+				-3.1
82,047	+				+0.2
82,120	+				+2.5
82,132	+				-0.2
82,133	-				-0.4
82,163	+				+1.5
82,163	+				+1.9
82,164	-				+0.2
82,323	+		PP_0072	0.18	-0.3
82,323	+		PP_0072	0.18	-2.9
82,323	+		PP_0072	0.18	+1.0
82,323	+		PP_0072	0.18	-1.0
82,323	+		PP_0072	0.18	+2.1
82,323	+		PP_0072	0.18	-0.1
82,323	+		PP_0072	0.18	+0.3
82,323	+		PP_0072	0.18	-3.2
82,323	+		PP_0072	0.18	-0.2
82,324	-		PP_0072	0.18	-0.4
82,324	-		PP_0072	0.18	+0.5
82,350	+		PP_0072	0.20	+1.0
82,351	-		PP_0072	0.20	+0.2
82,351	-		PP_0072	0.20	+0.9
82,351	-		PP_0072	0.20	-0.7
82,351	-		PP_0072	0.20	+1.5
82,488	+		PP_0072	0.34	+0.5
82,488	+		PP_0072	0.34	-0.5
82,488	+		PP_0072	0.34	+0.5
82,488	+		PP_0072	0.34	+0.4
82,489	-		PP_0072	0.35	+1.3
82,489	-		PP_0072	0.35	-2.5
82,489	-		PP_0072	0.35	+0.8
82,527	-		PP_0072	0.38	+0.7
82,671	-		PP_0072	0.53	+2.3
82,671	-		PP_0072	0.53	+2.1
82,671	-		PP_0072	0.53	-3.1
82,671	-		PP_0072	0.53	-2.3
82,722	+		PP_0072	0.58	+0.6
82,722	+		PP_0072	0.58	+1.5
82,722	+		PP_0072	0.58	+0.4
82,722	+		PP_0072	0.58	-2.5
82,722	+		PP_0072	0.58	+1.4
82,723	-		PP_0072	0.58	-1.6
82,723	-		PP_0072	0.58	-0.9
82,723	-		PP_0072	0.58	+2.7
82,740	+		PP_0072	0.60	-1.7
82,740	+		PP_0072	0.60	+0.3
82,740	+		PP_0072	0.60	+1.0
82,740	+		PP_0072	0.60	+1.7
82,740	+		PP_0072	0.60	+1.6
82,740	+		PP_0072	0.60	+0.1
82,741	-		PP_0072	0.60	+0.1
82,827	-		PP_0072	0.69	+1.0
82,831	+		PP_0072	0.70	+1.2
82,831	+		PP_0072	0.70	+1.5
82,831	+		PP_0072	0.70	+1.3
82,831	+		PP_0072	0.70	+0.4
82,832	-		PP_0072	0.70	-2.9
82,832	-		PP_0072	0.70	-1.3
82,846	-		PP_0072	0.71	-0.7
82,887	-		PP_0072	0.75	+1.2
82,887	-		PP_0072	0.75	-0.5
82,887	-		PP_0072	0.75	-0.3
82,887	-		PP_0072	0.75	+0.3
82,887	-		PP_0072	0.75	-0.2
82,923	-		PP_0072	0.79	+2.9
82,923	-		PP_0072	0.79	+1.4
82,975	-		PP_0072	0.84	-2.3
82,975	-		PP_0072	0.84	+1.0
82,992	+		PP_0072	0.86	-3.2
82,993	-		PP_0072	0.86	+2.0
82,993	-		PP_0072	0.86	-0.1
82,996	+		PP_0072	0.86	+1.0
83,141	+				+0.1
83,142	-				+0.2
83,217	+				+0.3
83,217	+				+0.5
83,218	-				-0.7
83,218	-				-1.1