Strain Fitness in Pseudomonas putida KT2440 around PP_5739

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
6,157,411	-		PP_5400	0.80	-0.8
6,157,411	-		PP_5400	0.80	-0.5
6,157,411	-		PP_5400	0.80	+2.3
6,157,484	-		PP_5400	0.86	-0.2
6,157,563	-				+0.1
6,157,563	-				-0.4
6,157,563	-				-0.4
6,157,720	+		PP_5401	0.13	-2.6
6,157,767	-		PP_5401	0.20	-0.2
6,157,804	+		PP_5401	0.26	+0.1
6,157,856	-		PP_5401	0.34	-0.4
6,157,977	+		PP_5401	0.53	+1.1
6,157,999	+		PP_5401	0.56	+0.0
6,158,000	-		PP_5401	0.57	+1.2
6,158,000	-		PP_5401	0.57	+1.3
6,158,008	-		PP_5401	0.58	-0.6
6,158,008	-		PP_5401	0.58	-1.4
6,158,043	+		PP_5401	0.63	+1.2
6,158,059	+		PP_5401	0.66	-0.2
6,158,059	+		PP_5401	0.66	+1.2
6,158,059	+		PP_5401	0.66	-1.9
6,158,143	+		PP_5401	0.79	-1.5
6,158,144	-		PP_5401	0.79	+0.6
6,158,144	-		PP_5401	0.79	-2.5
6,158,152	-		PP_5401	0.80	-0.3
6,158,217	-				+0.7
6,158,254	+				-2.3
6,158,254	+				+1.3
6,158,254	+				+1.9
6,158,255	-				-0.5
6,158,255	-				+0.4
6,158,257	+				-0.1
6,158,258	-				+2.1
6,158,258	-				-0.2
6,158,280	+				-2.8
6,158,280	+				-0.1
6,158,280	+				+1.6
6,158,280	+				-0.2
6,158,280	+				-0.8
6,158,280	+				+0.5
6,158,280	+				-0.1
6,158,280	+				-0.3
6,158,285	-				-2.0
6,158,285	-				+0.4
6,158,285	-				-0.0
6,158,312	+				-1.0
6,158,313	-				-1.4
6,158,326	+				-1.2
6,158,326	+				-1.3
6,158,327	-				-0.5
6,158,392	+				-0.6
6,158,392	+				-0.1
6,158,392	+				-0.4
6,158,393	-				-1.5
6,158,415	-		PP_5739	0.11	-0.2
6,158,429	+		PP_5739	0.16	-0.3
6,158,442	+		PP_5739	0.20	-1.7
6,158,443	-		PP_5739	0.21	-2.1
6,158,457	-		PP_5739	0.26	-0.9
6,158,457	-		PP_5739	0.26	-0.4
6,158,484	-		PP_5739	0.35	-1.0
6,158,495	+		PP_5739	0.39	-0.1
6,158,495	+		PP_5739	0.39	-0.2
6,158,495	+		PP_5739	0.39	-1.2
6,158,495	+		PP_5739	0.39	-2.7
6,158,495	+		PP_5739	0.39	-0.8
6,158,572	+		PP_5739	0.67	-0.3
6,158,572	+		PP_5739	0.67	-0.1
6,158,612	+		PP_5739	0.81	-1.0
6,158,612	+		PP_5739	0.81	+0.6
6,158,685	+				-2.4
6,159,079	+				-0.2
6,159,079	+				+1.0
6,159,079	+				+0.1
6,159,079	+				+1.1
6,159,215	+				-0.7
6,159,227	+				+1.2
6,159,306	+				+0.9
6,159,366	+				-0.3
6,159,414	+				+0.3
6,159,446	+				-1.0
6,159,446	+				+0.2
6,159,458	+				-0.2
6,159,458	+				+0.1
6,159,473	+				-1.1
6,159,473	+				+0.8
6,159,536	+				+0.6
6,159,536	+				+0.7
6,159,591	+				-0.2
6,159,594	+				+1.1
6,159,594	+				+0.2
6,159,594	+				+1.5
6,159,594	+				+1.2
6,159,594	+				-1.1
6,159,594	+				-1.2
6,159,594	+				-0.4
6,159,594	+				+0.5
6,159,595	-				-1.0
6,159,595	-				+0.6
6,159,595	-				-0.4
6,159,595	-				+0.0
6,159,595	-				+0.2
6,159,621	+		PP_5402	0.11	+0.2
6,159,621	+		PP_5402	0.11	-2.0
6,159,621	+		PP_5402	0.11	+2.1
6,159,621	+		PP_5402	0.11	+1.0
6,159,622	-		PP_5402	0.12	-0.8
6,159,622	-		PP_5402	0.12	+1.7
6,159,622	-		PP_5402	0.12	-0.7
6,159,622	-		PP_5402	0.12	-1.7
6,159,622	-		PP_5402	0.12	+0.1