Strain Fitness in Pseudomonas putida KT2440 around PP_5646

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
4,422,529	+		PP_3913	0.90	+1.1
4,422,529	+		PP_3913	0.90	-0.7
4,422,529	+		PP_3913	0.90	-1.1
4,422,529	+		PP_3913	0.90	-0.2
4,422,634	-				+0.4
4,422,693	-		PP_5645	0.15	-1.3
4,422,714	+		PP_5645	0.22	+0.4
4,422,749	+		PP_5645	0.34	-4.1
4,422,750	-		PP_5645	0.34	-0.8
4,422,799	+		PP_5645	0.50	+0.1
4,422,799	+		PP_5645	0.50	-1.2
4,422,800	-		PP_5645	0.51	-1.1
4,422,859	+		PP_5645	0.70	-0.2
4,422,859	+		PP_5645	0.70	-2.2
4,422,859	+		PP_5645	0.70	-2.0
4,422,859	+		PP_5645	0.70	-0.3
4,422,859	+		PP_5645	0.70	-0.3
4,422,859	+		PP_5645	0.70	-0.9
4,422,859	+				-1.0
4,422,859	+		PP_5645	0.70	+0.3
4,422,860	-		PP_5645	0.71	-1.5
4,422,860	-		PP_5645	0.71	+0.5
4,422,860	-		PP_5645	0.71	+0.6
4,422,860	-		PP_5645	0.71	-2.6
4,422,860	-		PP_5645	0.71	+0.0
4,422,925	+				-0.3
4,422,925	+				-1.3
4,422,925	+				+0.7
4,422,926	-				-0.5
4,422,926	-				+0.2
4,422,947	+				-1.9
4,422,947	+				-2.0
4,422,947	+				-1.3
4,422,948	-				-1.7
4,422,981	+				-1.1
4,423,024	+				-1.0
4,423,024	+				-0.5
4,423,044	-				-0.0
4,423,077	+				-0.3
4,423,078	-				+0.2
4,423,183	+		PP_3914	0.18	+0.3
4,423,183	+		PP_3914	0.18	-0.1
4,423,406	+		PP_3914	0.76	+0.7
4,423,406	+		PP_3914	0.76	+0.4
4,423,406	+		PP_3914	0.76	-1.2
4,423,407	-		PP_3914	0.77	+0.2
4,423,407	-		PP_3914	0.77	+1.3
4,423,407	-		PP_3914	0.77	+0.1
4,423,407	-		PP_3914	0.77	-0.1
4,423,432	-		PP_3914	0.83	+0.7
4,423,455	+		PP_3914	0.89	+0.1
4,423,455	+		PP_3914	0.89	+0.1
4,423,455	+		PP_3914	0.89	-1.6
4,423,456	-		PP_3914	0.89	+0.9
4,423,552	+		PP_5646	0.21	+1.4
4,423,553	-		PP_5646	0.22	+0.7
4,423,553	-		PP_5646	0.22	-1.0
4,423,563	+		PP_5646	0.25	-0.2
4,423,563	+		PP_5646	0.25	-1.4
4,423,563	+		PP_5646	0.25	+1.6
4,423,563	+		PP_5646	0.25	+0.2
4,423,563	+		PP_5646	0.25	-3.9
4,423,563	+		PP_5646	0.25	+0.6
4,423,563	+		PP_5646	0.25	-1.8
4,423,564	-		PP_5646	0.25	+0.3
4,423,564	-		PP_5646	0.25	+1.6
4,423,564	-		PP_5646	0.25	+0.4
4,423,564	-		PP_5646	0.25	+1.7
4,423,564	-		PP_5646	0.25	+0.5
4,423,564	-		PP_5646	0.25	+0.1
4,423,564	-		PP_5646	0.25	+0.7
4,423,564	-		PP_5646	0.25	+0.9
4,423,594	+		PP_5646	0.36	+0.5
4,423,594	+		PP_5646	0.36	+1.0
4,423,595	-		PP_5646	0.37	+0.6
4,423,607	+		PP_5646	0.41	+0.4
4,423,607	+		PP_5646	0.41	+0.7
4,423,607	+		PP_5646	0.41	+0.5
4,423,641	+		PP_5646	0.53	-0.4
4,423,641	+		PP_5646	0.53	+0.2
4,423,641	+		PP_5646	0.53	-0.3
4,423,642	-		PP_5646	0.53	+0.2
4,423,642	-		PP_5646	0.53	+0.1
4,423,642	-		PP_5646	0.53	+0.6
4,423,720	+		PP_5646	0.81	+1.0
4,423,760	+				-0.3
4,423,760	+				+0.4
4,423,761	-				+0.9
4,423,761	-				+0.1
4,423,942	+		PP_3915	0.54	-0.1
4,423,942	+		PP_3915	0.54	-0.6
4,423,942	+		PP_3915	0.54	+1.5
4,423,943	-		PP_3915	0.54	-0.2
4,423,981	+		PP_3915	0.66	+0.5
4,423,981	+		PP_3915	0.66	+1.6
4,423,981	+		PP_3915	0.66	+0.7
4,423,981	+		PP_3915	0.66	-1.6
4,423,982	-		PP_3915	0.66	-0.0
4,423,982	-		PP_3915	0.66	+0.3
4,423,982	-		PP_3915	0.66	+0.6
4,424,032	+		PP_3915	0.81	+0.6
4,424,062	+				-0.2
4,424,062	+				+0.7
4,424,062	+				+1.8
4,424,062	+				+0.2
4,424,063	-				+0.0
4,424,224	-		PP_3916	0.35	+0.4
4,424,344	-		PP_3916	0.65	+0.4
4,424,425	+		PP_3916	0.86	+1.8
4,424,426	-		PP_3916	0.86	-1.5
4,424,501	+				-0.8
4,424,501	+				+1.5
4,424,501	+				-0.1
4,424,502	-				+0.4
4,424,502	-				-0.6
4,424,502	-				-1.2
4,424,502	-				-1.7
4,424,502	-				+0.5
4,424,510	+				-2.1
4,424,510	+				-2.4
4,424,511	-				+1.5
4,424,511	-				+1.3
4,424,519	+				-0.3
4,424,519	+				-2.4
4,424,520	-				+0.8
4,424,660	-				-1.1
4,424,660	-				-0.2
4,424,672	-				-2.3
4,424,735	+		PP_5647	0.24	-2.6
4,424,735	+		PP_5647	0.24	+0.5
4,424,735	+		PP_5647	0.24	-0.2
4,424,736	-		PP_5647	0.24	-1.0
4,424,758	+		PP_5647	0.32	+0.2
4,424,759	-		PP_5647	0.33	+0.2
4,424,759	-		PP_5647	0.33	-1.9