Strain Fitness in Pseudomonas putida KT2440 around PP_5582

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
3,519,323	+		PP_5580	0.74	+0.7
3,519,380	-				-1.5
3,519,457	-				-0.2
3,519,647	-				+0.6
3,519,690	+				-0.9
3,519,733	+				-0.7
3,519,733	+				+0.5
3,519,885	+				+0.5
3,519,924	-				+0.3
3,519,924	-				+2.0
3,519,956	-				-0.9
3,519,956	-				+0.9
3,519,958	+				-0.5
3,519,959	-				+1.1
3,519,976	-				+1.3
3,519,976	-				-1.2
3,519,999	+				+0.9
3,520,028	+				+0.2
3,520,037	+				-0.2
3,520,045	+				-0.7
3,520,083	-				+1.1
3,520,094	-				-0.9
3,520,406	+		PP_5582	0.31	-1.7
3,520,829	+				+0.2
3,520,830	-				-0.7
3,520,982	+				+1.5
3,520,983	-				-0.6
3,520,983	-				+1.1
3,521,051	+				+0.4
3,521,133	+				-0.5
3,521,140	-				-0.5
3,521,369	+				+2.1
3,521,370	-				-0.9
3,521,671	-		PP_5583	0.51	-0.5