Strain Fitness in Pseudomonas putida KT2440 around PP_5372

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
6,121,425	+		PP_5371	0.48	+0.7
6,121,425	+		PP_5371	0.48	+1.5
6,121,607	+		PP_5371	0.61	-2.7
6,121,624	-		PP_5371	0.62	+2.3
6,121,647	+		PP_5371	0.64	+0.7
6,121,648	-		PP_5371	0.64	+0.5
6,121,648	-		PP_5371	0.64	-1.9
6,121,648	-		PP_5371	0.64	-0.6
6,121,648	-		PP_5371	0.64	+0.7
6,121,694	-		PP_5371	0.67	-0.5
6,121,695	+		PP_5371	0.67	-1.1
6,121,695	+		PP_5371	0.67	+1.8
6,121,695	+		PP_5371	0.67	-2.2
6,121,695	+		PP_5371	0.67	+0.5
6,121,695	+		PP_5371	0.67	+1.0
6,121,695	+		PP_5371	0.67	+0.1
6,121,696	-		PP_5371	0.67	-2.0
6,121,696	-		PP_5371	0.67	-1.4
6,121,699	+		PP_5371	0.67	+1.0
6,121,699	+		PP_5371	0.67	-0.1
6,121,699	+		PP_5371	0.67	+0.6
6,121,700	-		PP_5371	0.68	+0.3
6,121,700	-		PP_5371	0.68	-2.1
6,121,801	-		PP_5371	0.75	-0.1
6,122,112	+				+1.4
6,122,112	+				-0.8
6,122,113	-				+0.0
6,122,150	+				-0.6
6,122,151	-				+0.2
6,122,151	-				+1.1
6,122,151	-				-0.5
6,122,151	-				-0.8
6,122,151	-				+0.2
6,122,176	+				+0.3
6,122,176	+				+0.8
6,122,176	+				-0.2
6,122,177	-				+1.3
6,122,205	+				-1.4
6,122,206	-				-0.0
6,122,206	-				-1.4
6,122,206	-				+0.1
6,122,206	-				-0.1
6,122,211	+				-0.9
6,122,211	+				-0.5
6,122,211	+				-0.9
6,122,212	-				+0.3
6,122,212	-				+0.1
6,122,212	-				-0.3
6,122,289	+				+0.9
6,122,289	+				+0.5
6,122,290	-				+0.2
6,122,290	-				-0.4
6,122,439	-		PP_5372	0.19	-0.9
6,122,439	-		PP_5372	0.19	-0.2
6,122,474	+		PP_5372	0.22	+1.8
6,122,475	-		PP_5372	0.22	+0.6
6,122,475	-		PP_5372	0.22	+0.6
6,122,504	+		PP_5372	0.24	-1.5
6,122,520	+		PP_5372	0.25	+0.4
6,122,520	+		PP_5372	0.25	+0.9
6,122,520	+		PP_5372	0.25	+1.3
6,122,520	+		PP_5372	0.25	-1.2
6,122,521	-		PP_5372	0.25	+0.5
6,122,521	-		PP_5372	0.25	+0.6
6,122,521	-		PP_5372	0.25	-0.1
6,122,521	-		PP_5372	0.25	-0.1
6,122,702	+		PP_5372	0.37	+0.6
6,122,702	+		PP_5372	0.37	+1.0
6,122,703	-		PP_5372	0.37	+1.0
6,122,703	-		PP_5372	0.37	+0.5
6,122,715	+		PP_5372	0.38	+0.5
6,122,716	-		PP_5372	0.38	+0.3
6,122,716	-		PP_5372	0.38	-3.2
6,122,716	-		PP_5372	0.38	+1.5
6,122,720	-		PP_5372	0.39	+0.2
6,122,720	-		PP_5372	0.39	+0.5
6,122,729	+		PP_5372	0.39	+0.7
6,122,729	+		PP_5372	0.39	+0.1
6,122,729	+		PP_5372	0.39	+0.5
6,122,964	+		PP_5372	0.55	-1.1
6,122,964	+		PP_5372	0.55	+0.1
6,122,965	-		PP_5372	0.56	+1.9
6,123,140	+		PP_5372	0.68	+0.6
6,123,190	-		PP_5372	0.71	+0.1
6,123,190	-		PP_5372	0.71	-0.7
6,123,203	+		PP_5372	0.72	+0.7
6,123,203	+		PP_5372	0.72	+0.5
6,123,204	-		PP_5372	0.72	+1.0
6,123,204	-		PP_5372	0.72	-0.9
6,123,204	-		PP_5372	0.72	-1.0
6,123,204	-		PP_5372	0.72	+0.3
6,123,204	-		PP_5372	0.72	+0.5
6,123,207	+		PP_5372	0.72	+1.1
6,123,208	-		PP_5372	0.72	+1.6
6,123,208	-		PP_5372	0.72	-0.3
6,123,261	+		PP_5372	0.76	-0.7
6,123,261	+		PP_5372	0.76	+0.3
6,123,261	+		PP_5372	0.76	-0.0
6,123,264	+		PP_5372	0.76	+0.4
6,123,265	-		PP_5372	0.76	-0.0
6,123,265	-		PP_5372	0.76	+1.7
6,123,273	+		PP_5372	0.77	+1.8
6,123,535	+				-1.1
6,123,582	-				-0.5
6,123,597	-				-3.1
6,123,670	+				+0.8
6,123,670	+				+0.3
6,123,715	+				+0.7
6,123,778	-		PP_5373	0.13	+0.5
6,123,778	-		PP_5373	0.13	-1.8
6,123,958	+		PP_5373	0.29	+1.4
6,123,959	-		PP_5373	0.29	-0.8
6,123,959	-		PP_5373	0.29	-0.7
6,124,036	+		PP_5373	0.35	+1.6
6,124,036	+		PP_5373	0.35	+0.1
6,124,037	-		PP_5373	0.35	-1.6
6,124,037	-		PP_5373	0.35	-1.8
6,124,037	-		PP_5373	0.35	+0.7
6,124,037	-		PP_5373	0.35	+2.5
6,124,037	-		PP_5373	0.35	+0.1
6,124,081	+		PP_5373	0.39	-0.9
6,124,081	+		PP_5373	0.39	+0.4
6,124,081	+		PP_5373	0.39	+3.1
6,124,103	-		PP_5373	0.41	+0.7
6,124,138	+		PP_5373	0.44	+0.3
6,124,138	+		PP_5373	0.44	-2.5
6,124,139	-		PP_5373	0.44	-1.9
6,124,139	-		PP_5373	0.44	-0.4
6,124,139	-		PP_5373	0.44	+0.1
6,124,150	+		PP_5373	0.45	-1.5
6,124,150	+		PP_5373	0.45	-0.3
6,124,150	+		PP_5373	0.45	-0.8
6,124,151	-		PP_5373	0.45	-0.0
6,124,165	-		PP_5373	0.46	-0.1
6,124,165	-		PP_5373	0.46	-0.6
6,124,196	+		PP_5373	0.49	-0.6
6,124,196	+		PP_5373	0.49	+0.1
6,124,196	+		PP_5373	0.49	-2.1
6,124,196	+		PP_5373	0.49	+0.4
6,124,196	+		PP_5373	0.49	+0.1
6,124,196	+		PP_5373	0.49	+0.4
6,124,196	+		PP_5373	0.49	+0.6
6,124,197	-		PP_5373	0.49	+0.9
6,124,197	-		PP_5373	0.49	-2.3
6,124,197	-		PP_5373	0.49	-1.1
6,124,197	-		PP_5373	0.49	-0.4
6,124,197	-		PP_5373	0.49	-0.5
6,124,450	+		PP_5373	0.70	+0.1
6,124,451	-		PP_5373	0.70	-1.2
6,124,451	-		PP_5373	0.70	+0.4
6,124,466	-		PP_5373	0.71	-0.2