Strain Fitness in Pseudomonas putida KT2440 around PP_5251

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
5,992,377	+		PP_5250	0.29	+0.8
5,992,377	+		PP_5250	0.29	-2.7
5,992,377	+		PP_5250	0.29	-0.0
5,992,378	-		PP_5250	0.29	-0.1
5,992,460	+		PP_5250	0.36	-0.6
5,992,460	+		PP_5250	0.36	-1.6
5,992,658	+		PP_5250	0.51	+0.6
5,992,658	+		PP_5250	0.51	-0.2
5,992,658	+		PP_5250	0.51	+0.2
5,992,658	+		PP_5250	0.51	-1.5
5,992,659	-		PP_5250	0.51	+0.6
5,992,659	-		PP_5250	0.51	-0.7
5,992,694	+		PP_5250	0.54	-1.6
5,992,695	-		PP_5250	0.54	-0.6
5,992,695	-		PP_5250	0.54	+2.0
5,992,745	+		PP_5250	0.58	+2.5
5,992,746	-		PP_5250	0.58	-2.1
5,992,800	-		PP_5250	0.63	-1.3
5,992,818	-		PP_5250	0.64	-0.1
5,992,818	-		PP_5250	0.64	-0.1
5,992,818	-		PP_5250	0.64	-1.1
5,992,818	-		PP_5250	0.64	-1.9
5,992,818	-		PP_5250	0.64	+0.5
5,992,851	-		PP_5250	0.67	-1.2
5,992,904	+		PP_5250	0.71	+0.2
5,992,904	+		PP_5250	0.71	+0.3
5,992,905	-		PP_5250	0.71	-0.2
5,992,905	-		PP_5250	0.71	+1.0
5,992,925	+		PP_5250	0.72	+0.5
5,992,925	+		PP_5250	0.72	-0.2
5,992,970	+		PP_5250	0.76	+0.7
5,992,970	+		PP_5250	0.76	-0.3
5,992,971	-		PP_5250	0.76	+0.2
5,993,025	-		PP_5250	0.80	-0.1
5,993,076	-		PP_5250	0.84	-0.5
5,993,076	-		PP_5250	0.84	+0.2
5,993,132	+		PP_5250	0.89	+0.3
5,993,132	+		PP_5250	0.89	-0.8
5,993,132	+		PP_5250	0.89	+0.3
5,993,133	-		PP_5250	0.89	-0.1
5,993,234	+				+0.4
5,993,235	-				+0.2
5,993,235	-				+0.1
5,993,235	-				+1.0
5,993,312	+				+1.4
5,993,443	+		PP_5251	0.11	+0.1
5,993,517	+		PP_5251	0.15	+1.7
5,993,518	-		PP_5251	0.15	+0.4
5,993,636	+		PP_5251	0.23	+0.5
5,993,999	+		PP_5251	0.45	-2.4
5,994,080	+		PP_5251	0.50	-0.5
5,994,152	-		PP_5251	0.55	+0.2
5,994,168	+		PP_5251	0.56	-1.0
5,994,168	+		PP_5251	0.56	-2.1
5,994,169	-		PP_5251	0.56	-0.4
5,994,169	-		PP_5251	0.56	+1.2
5,994,169	-		PP_5251	0.56	+1.0
5,994,169	-		PP_5251	0.56	+0.6
5,994,169	-		PP_5251	0.56	-0.9
5,994,209	-		PP_5251	0.58	+0.8
5,994,211	-		PP_5251	0.59	+1.0
5,994,211	-		PP_5251	0.59	+1.1
5,994,329	-		PP_5251	0.66	+0.9
5,994,330	+		PP_5251	0.66	+0.9
5,994,330	+		PP_5251	0.66	+0.0
5,994,330	+		PP_5251	0.66	+0.5
5,994,330	+		PP_5251	0.66	+0.7
5,994,330	+		PP_5251	0.66	-0.1
5,994,330	+		PP_5251	0.66	+1.2
5,994,331	-		PP_5251	0.66	+0.5
5,994,331	-		PP_5251	0.66	+1.5
5,994,331	-		PP_5251	0.66	+1.0
5,994,331	-		PP_5251	0.66	-0.5
5,994,331	-		PP_5251	0.66	+0.9
5,994,446	+		PP_5251	0.73	+0.5
5,994,579	+		PP_5251	0.82	+0.2
5,994,580	-		PP_5251	0.82	-0.2
5,994,838	+				-0.2
5,994,838	+				-0.1
5,994,838	+				-0.3
5,994,838	+				+0.6
5,994,838	+				+0.5
5,994,839	-				-0.0
5,994,857	+				-0.4
5,994,857	+				+1.9
5,994,857	+				+1.1
5,994,857	+				+0.4
5,994,858	-				-0.2
5,994,858	-				+0.4
5,995,018	+				+1.2
5,995,019	-				+0.7
5,995,050	+				+0.1
5,995,050	+				+0.6
5,995,051	-				-1.1
5,995,051	-				+0.2
5,995,296	+		PP_5252	0.12	+1.8
5,995,296	+		PP_5252	0.12	-0.0
5,995,297	-		PP_5252	0.13	-2.4
5,995,297	-		PP_5252	0.13	-0.1
5,995,545	+		PP_5252	0.25	-1.1
5,995,546	-		PP_5252	0.25	-0.0
5,995,566	+		PP_5252	0.26	-0.4
5,995,566	+		PP_5252	0.26	-0.9
5,995,566	+		PP_5252	0.26	+0.6
5,995,567	-		PP_5252	0.26	+1.2
5,995,567	-		PP_5252	0.26	-0.3
5,995,680	+		PP_5252	0.32	+1.1
5,995,681	-		PP_5252	0.32	+0.6
5,995,681	-		PP_5252	0.32	-0.4
5,995,681	-		PP_5252	0.32	-1.2
5,995,718	-		PP_5252	0.34	-0.4
5,995,718	-		PP_5252	0.34	+1.4
5,995,860	+		PP_5252	0.41	-1.3
5,995,860	+		PP_5252	0.41	-1.8
5,995,860	+		PP_5252	0.41	+1.5
5,995,861	-		PP_5252	0.41	-0.7
5,995,861	-		PP_5252	0.41	+0.1
5,995,861	-		PP_5252	0.41	+1.4