Strain Fitness in Pseudomonas putida KT2440 around PP_5193

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
5,923,815	+		PP_5192	0.79	+0.9
5,924,082	-		PP_5192	0.88	-0.9
5,924,090	+		PP_5192	0.88	+0.5
5,924,090	+		PP_5192	0.88	-1.0
5,924,090	+		PP_5192	0.88	-1.4
5,924,090	+		PP_5192	0.88	-1.0
5,924,099	+		PP_5192	0.88	+0.4
5,924,205	-				-1.4
5,924,447	+				+0.6
5,924,447	+				-1.9
5,924,470	-				+1.4
5,924,470	-				-0.7
5,924,477	+				+0.3
5,924,477	+				+0.2
5,924,478	-				-1.1
5,924,478	-				+1.0
5,924,548	+				+0.6
5,924,582	+				-1.2
5,924,582	+				-1.1
5,924,583	-				+0.3
5,924,590	+				+0.9
5,924,628	+				-0.4
5,924,629	-				+1.2
5,924,722	-		PP_5193	0.25	-1.7
5,924,722	-		PP_5193	0.25	-2.5
5,924,799	+		PP_5193	0.45	-0.7
5,924,799	+		PP_5193	0.45	-0.4
5,924,799	+		PP_5193	0.45	-0.5
5,924,799	+		PP_5193	0.45	+1.5
5,924,799	+		PP_5193	0.45	-2.4
5,924,799	+		PP_5193	0.45	-1.8
5,924,799	+		PP_5193	0.45	-1.1
5,924,799	+		PP_5193	0.45	+0.8
5,924,799	+		PP_5193	0.45	+0.7
5,924,799	-		PP_5193	0.45	-0.1
5,924,800	-		PP_5193	0.45	-0.4
5,924,800	-		PP_5193	0.45	+0.3
5,924,800	-				+0.5
5,924,800	-		PP_5193	0.45	-2.6
5,924,800	-		PP_5193	0.45	+0.2
5,924,800	-		PP_5193	0.45	-0.8
5,924,800	-		PP_5193	0.45	-2.8
5,924,800	-		PP_5193	0.45	+0.6
5,924,888	+		PP_5193	0.68	-2.6
5,925,053	-				-0.9
5,925,054	+				-1.9
5,925,055	-				+0.2
5,925,055	-				+1.2
5,925,164	-				-1.8
5,925,211	+		PP_5194	0.14	-0.9
5,925,212	-		PP_5194	0.14	-2.3
5,925,273	-		PP_5194	0.19	+0.1
5,925,780	+		PP_5194	0.66	+0.4
5,925,889	+		PP_5194	0.76	+1.4
5,925,889	+		PP_5194	0.76	+0.1
5,925,890	-		PP_5194	0.76	+0.4
5,925,891	+		PP_5194	0.77	-1.1
5,925,892	-		PP_5194	0.77	-1.3
5,925,892	-		PP_5194	0.77	-0.1
5,925,892	-		PP_5194	0.77	-0.2
5,925,892	-		PP_5194	0.77	-0.0
5,925,892	-		PP_5194	0.77	+0.9
5,925,892	-		PP_5194	0.77	-0.5
5,925,892	-		PP_5194	0.77	-1.3
5,925,992	-		PP_5194	0.86	-0.1
5,925,992	-		PP_5194	0.86	+0.7