Strain Fitness in Pseudomonas putida KT2440 around PP_5154

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
5,878,950	+				+2.6
5,878,951	-				+0.6
5,878,951	-				+1.4
5,878,951	-				+1.4
5,879,021	+				-0.0
5,879,021	+				+1.1
5,879,103	-				+1.1
5,879,112	+				+0.4
5,879,112	+				+0.1
5,879,113	-				-1.1
5,879,138	-				+0.1
5,879,138	-				-0.3
5,879,358	+		PP_5153	0.27	-0.6
5,879,358	+		PP_5153	0.27	-1.5
5,879,359	-		PP_5153	0.27	+0.5
5,879,359	-		PP_5153	0.27	+0.5
5,879,359	-		PP_5153	0.27	+0.8
5,879,362	-		PP_5153	0.27	-0.3
5,879,362	-		PP_5153	0.27	+0.9
5,879,362	-		PP_5153	0.27	-0.3
5,879,362	-		PP_5153	0.27	-2.6
5,879,374	+		PP_5153	0.29	+0.1
5,879,636	+		PP_5153	0.69	-0.1
5,879,637	-		PP_5153	0.69	+1.9
5,879,765	+		PP_5153	0.88	+0.4
5,879,765	+		PP_5153	0.88	+2.1
5,879,765	+		PP_5153	0.88	-0.6
5,879,766	-				+0.9
5,879,766	-		PP_5153	0.88	+0.1
5,879,821	+				-0.0
5,879,821	+				+0.1
5,879,821	+				-0.2
5,879,821	+				-0.6
5,879,822	-				-2.9
5,879,825	+				+2.1
5,879,825	+				+0.2
5,879,826	-				-2.0
5,879,826	-				+0.6
5,879,838	-				+0.3
5,879,912	+				-0.4
5,879,931	+				+0.1
5,879,931	+				+0.2
5,879,931	+				-1.0
5,879,931	+				+0.1
5,879,931	+				-0.5
5,879,932	-				+0.9
5,879,932	-				+0.9
5,879,932	-				+1.6
5,879,932	-				-0.6
5,879,971	+				+1.1
5,879,971	+				+0.3
5,879,980	+				+1.1
5,880,031	+		PP_5154	0.12	-1.3
5,880,101	+		PP_5154	0.17	-1.3
5,880,101	+		PP_5154	0.17	+0.2
5,880,101	+		PP_5154	0.17	+1.8
5,880,101	+		PP_5154	0.17	-0.2
5,880,101	+		PP_5154	0.17	+0.7
5,880,102	-		PP_5154	0.17	+0.5
5,880,102	-		PP_5154	0.17	-0.6
5,880,102	-		PP_5154	0.17	+0.7
5,880,102	-		PP_5154	0.17	+1.2
5,880,102	-		PP_5154	0.17	+2.5
5,880,154	+		PP_5154	0.21	+1.5
5,880,155	-		PP_5154	0.21	-1.0
5,880,170	-		PP_5154	0.22	+0.5
5,880,256	+		PP_5154	0.28	+1.1
5,880,289	+		PP_5154	0.31	+1.1
5,880,290	-		PP_5154	0.31	+0.8
5,880,290	-		PP_5154	0.31	+0.8
5,880,383	+		PP_5154	0.37	+0.9
5,880,439	+		PP_5154	0.42	-1.6
5,880,439	+		PP_5154	0.42	+1.4
5,880,440	-		PP_5154	0.42	+0.9
5,880,440	-		PP_5154	0.42	+1.4
5,880,794	+		PP_5154	0.67	+0.5
5,880,794	+		PP_5154	0.67	+0.0
5,880,794	+		PP_5154	0.67	+0.5
5,880,886	+		PP_5154	0.74	+0.5
5,880,886	+		PP_5154	0.74	-0.0
5,880,991	+		PP_5154	0.82	-0.3
5,881,120	-				+0.6
5,881,183	+				+1.0
5,881,183	+				+2.0
5,881,184	-				+0.4
5,881,250	+				-0.3
5,881,250	+				-0.0
5,881,250	+				+1.1
5,881,251	-				+0.7
5,881,286	+				+1.2
5,881,286	+				+1.6
5,881,287	-				+0.3
5,881,287	-				-0.2
5,881,344	+				+0.9
5,881,344	+				-1.1
5,881,345	-				-1.6
5,881,345	-				-0.3
5,881,345	-				-0.3
5,881,349	+				+0.1
5,881,349	+				+1.2
5,881,349	+				+0.3
5,881,350	-				-2.8
5,881,350	-				-1.5
5,881,350	-				-1.9
5,881,354	+				-2.6
5,881,354	+				-0.9
5,881,354	+				+0.1
5,881,355	-				-2.0
5,881,355	-				-3.1
5,881,375	+				-3.0
5,881,375	+				+2.1
5,881,376	-				-1.2
5,881,376	-				-1.7
5,881,376	-				-0.8
5,881,434	-				-0.2
5,881,548	+				-0.1
5,881,549	-				-3.5
5,881,549	-				-1.0
5,881,756	-		PP_5155	0.26	-0.6
5,881,756	-		PP_5155	0.26	-1.7
5,881,929	-		PP_5155	0.40	-3.9
5,881,971	+		PP_5155	0.43	-0.3
5,881,971	+		PP_5155	0.43	-1.1
5,881,972	-		PP_5155	0.43	-0.1
5,881,972	-		PP_5155	0.43	-3.1