Strain Fitness in Pseudomonas putida KT2440 around PP_4904

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
5,573,944	-				+0.8
5,573,982	+				-1.8
5,573,982	+				-1.3
5,573,983	-				+0.2
5,573,983	-				+0.4
5,573,983	-				-0.5
5,573,995	-				-0.7
5,574,004	+				+2.2
5,574,004	+				+0.1
5,574,005	-				-0.2
5,574,082	+				-1.2
5,574,082	+				+1.8
5,574,082	+				-1.1
5,574,112	+				-0.3
5,574,112	+				+0.4
5,574,112	+				-0.3
5,574,113	-				-0.9
5,574,113	-				-0.3
5,574,113	-				+0.8
5,574,113	-				-1.1
5,574,113	-				+0.2
5,574,117	-				-1.6
5,574,117	-				+0.6
5,574,125	+				+1.1
5,574,192	+				+0.7
5,574,192	+				-2.5
5,574,192	+				-1.3
5,574,193	-				+0.2
5,574,254	+				+1.7
5,574,255	-				-1.4
5,574,554	+		PP_4904	0.29	-1.5
5,574,648	+		PP_4904	0.38	-3.5
5,574,653	+		PP_4904	0.38	-3.0
5,574,672	-		PP_4904	0.40	-3.3
5,574,750	+		PP_4904	0.48	-2.3
5,574,751	-		PP_4904	0.48	-3.0
5,574,761	+		PP_4904	0.49	-1.3
5,574,761	+		PP_4904	0.49	-3.0
5,574,762	-		PP_4904	0.49	-1.5
5,574,826	-		PP_4904	0.55	-2.2
5,575,076	+		PP_4904	0.79	-0.6
5,575,076	+		PP_4904	0.79	-1.4
5,575,076	+		PP_4904	0.79	-0.0
5,575,076	+		PP_4904	0.79	-2.3
5,575,077	-		PP_4904	0.79	-2.4
5,575,077	-		PP_4904	0.79	-2.8
5,575,077	-		PP_4904	0.79	-2.7
5,575,104	+		PP_4904	0.82	-2.9
5,575,104	+		PP_4904	0.82	-1.2
5,575,118	+		PP_4904	0.83	+1.1
5,575,119	-		PP_4904	0.83	-2.4
5,575,119	-		PP_4904	0.83	-3.1
5,575,353	-				-3.5
5,575,499	+		PP_4905	0.24	-1.0
5,575,500	-		PP_4905	0.24	-2.1
5,575,512	+		PP_4905	0.25	-4.0
5,575,525	-		PP_4905	0.27	-4.3
5,575,543	+		PP_4905	0.29	-0.4
5,575,543	+		PP_4905	0.29	-3.5
5,575,543	+		PP_4905	0.29	-2.4
5,575,543	+		PP_4905	0.29	-2.5
5,575,544	-		PP_4905	0.29	-3.5
5,575,544	-		PP_4905	0.29	-2.7
5,575,638	+				-1.3
5,575,766	+		PP_4905	0.55	-1.3
5,575,815	-		PP_4905	0.61	-1.9
5,575,929	-		PP_4905	0.74	-3.2
5,576,120	-				-1.0
5,576,142	+				-2.5
5,576,142	+				-4.1
5,576,142	+				-2.2
5,576,148	+				-4.2
5,576,148	+				-1.0
5,576,148	+				-3.7
5,576,149	-				-1.4
5,576,149	-				-0.8
5,576,149	-				-1.4
5,576,180	+				-1.7
5,576,196	+				-3.3
5,576,197	-				-1.1
5,576,211	-				-0.5
5,576,211	-				-0.5
5,576,211	-				-1.5
5,576,214	+				-4.0
5,576,215	-				+0.1
5,576,236	+				-2.9
5,576,236	+				-1.5
5,576,236	+				-2.9
5,576,237	-				-0.9
5,576,237	-				-0.1
5,576,239	-				-0.5
5,576,239	-				+1.2