Strain Fitness in Pseudomonas putida KT2440 around PP_4379

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
4,969,661	-		PP_4378	0.72	-3.8
4,969,694	-		PP_4378	0.73	-2.3
4,969,694	-		PP_4378	0.73	-3.0
4,969,694	-		PP_4378	0.73	-2.5
4,969,725	+		PP_4378	0.75	-2.6
4,969,726	-		PP_4378	0.75	-2.7
4,969,726	-		PP_4378	0.75	-0.8
4,969,861	+		PP_4378	0.81	-2.8
4,969,861	+		PP_4378	0.81	-3.9
4,969,861	+		PP_4378	0.81	-3.1
4,969,862	-		PP_4378	0.82	-0.9
4,969,862	-		PP_4378	0.82	-1.9
4,969,868	-		PP_4378	0.82	-3.1
4,969,969	+		PP_4378	0.87	+0.1
4,969,969	+		PP_4378	0.87	-3.4
4,969,969	+		PP_4378	0.87	-2.6
4,969,969	-		PP_4378	0.87	-2.2
4,969,970	-		PP_4378	0.87	-2.6
4,970,023	+		PP_4378	0.89	-2.2
4,970,024	-		PP_4378	0.89	-2.5
4,970,029	+		PP_4378	0.90	-1.4
4,970,029	+		PP_4378	0.90	-0.6
4,970,029	+		PP_4378	0.90	-4.0
4,970,029	+		PP_4378	0.90	-0.9
4,970,029	+		PP_4378	0.90	-2.0
4,970,030	-		PP_4378	0.90	-1.6
4,970,030	-		PP_4378	0.90	-2.2
4,970,030	-		PP_4378	0.90	-3.9
4,970,030	-		PP_4378	0.90	-0.2
4,970,192	+				-2.2
4,970,228	-				-3.0
4,970,228	-				-2.4
4,970,259	+				-1.9
4,970,259	+				-4.1
4,970,259	+				-2.1
4,970,259	+				-0.8
4,970,259	+				-1.3
4,970,259	+				-2.7
4,970,260	-				-3.4
4,970,260	-				-1.1
4,970,260	-				-2.6
4,970,265	+				-2.7
4,970,546	-				+0.1
4,970,546	-				+0.1
4,970,573	-				-0.4
4,970,620	+				-0.4
4,970,620	+				+0.0
4,970,761	+				-0.2
4,970,762	-		PP_4379	0.14	-0.4
4,970,762	-		PP_4379	0.14	-1.0
4,970,762	-		PP_4379	0.14	-1.2
4,971,202	-		PP_4379	0.61	-1.8
4,971,202	-		PP_4379	0.61	-0.1
4,971,210	+		PP_4379	0.62	-2.5
4,971,210	+		PP_4379	0.62	-0.4
4,971,211	-		PP_4379	0.62	-1.8
4,971,211	-		PP_4379	0.62	-0.9
4,971,211	-		PP_4379	0.62	-1.4
4,971,216	+		PP_4379	0.62	-2.6
4,971,216	+		PP_4379	0.62	-3.0
4,971,216	+		PP_4379	0.62	-1.5
4,971,217	-		PP_4379	0.62	-0.1
4,971,217	-		PP_4379	0.62	-0.9
4,971,510	+				-1.0
4,971,510	+				-2.2
4,971,510	+				+0.7
4,971,510	+				+0.6
4,971,510	+				-2.4
4,971,511	-				+0.9
4,971,511	-				-0.4
4,971,511	-				-1.3
4,971,537	+				-0.5
4,971,651	+				-1.5
4,971,652	-				+0.8
4,971,703	+				+0.7
4,971,703	+				-2.2
4,971,704	-				+1.4
4,971,704	-				+0.1
4,971,704	-				-0.1
4,971,704	-				+0.6
4,971,704	-				-0.0
4,971,704	-				-0.5
4,971,704	-				-1.0
4,971,708	+				-1.2
4,971,753	+				-0.9
4,971,844	-				-2.3
4,971,844	-				+1.0
4,971,844	-				+1.0
4,971,896	+				-0.8
4,971,983	+				+1.0
4,971,983	+				+0.6
4,971,983	+				-0.8
4,972,003	+				-2.0
4,972,003	+				-2.2
4,972,003	+				-3.3
4,972,003	+				-2.8
4,972,004	-				-1.6
4,972,310	-		PP_4380	0.21	-1.9
4,972,310	-		PP_4380	0.21	-2.6
4,972,323	+		PP_4380	0.22	+2.1
4,972,324	-		PP_4380	0.22	-1.2
4,972,324	-		PP_4380	0.22	-3.0
4,972,351	-		PP_4380	0.24	-2.0
4,972,407	+		PP_4380	0.27	-0.3
4,972,407	+		PP_4380	0.27	-2.0
4,972,408	-		PP_4380	0.27	-1.8
4,972,408	-		PP_4380	0.27	-0.6
4,972,441	+		PP_4380	0.29	-1.6
4,972,442	-		PP_4380	0.29	-0.8
4,972,442	-		PP_4380	0.29	-2.2
4,972,446	+		PP_4380	0.30	-3.7
4,972,447	-		PP_4380	0.30	-2.5
4,972,478	+		PP_4380	0.32	-2.6
4,972,479	-		PP_4380	0.32	-3.1
4,972,499	+		PP_4380	0.33	-0.8
4,972,499	+		PP_4380	0.33	-1.2
4,972,551	+		PP_4380	0.36	-0.8
4,972,551	+		PP_4380	0.36	-0.5
4,972,551	+		PP_4380	0.36	-2.6
4,972,552	-		PP_4380	0.36	-2.5
4,972,552	-		PP_4380	0.36	-2.6
4,972,552	-		PP_4380	0.36	-2.5
4,972,552	-		PP_4380	0.36	-1.1