Strain Fitness in Pseudomonas putida KT2440 around PP_4357

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
4,948,395	+				-0.3
4,948,396	-				+0.7
4,948,396	-				-1.6
4,948,396	-				-3.8
4,948,396	-				-1.2
4,948,518	+		PP_4356	0.24	-1.3
4,948,518	+		PP_4356	0.24	-0.7
4,948,547	+		PP_4356	0.31	-0.2
4,948,547	+		PP_4356	0.31	-0.7
4,948,877	+				-3.5
4,949,357	+				-2.8
4,949,357	+				+0.9
4,949,358	-				-0.9
4,949,358	-				-0.9
4,949,358	-				-0.7
4,949,811	+		PP_4358	0.45	-2.2
4,949,812	-		PP_4358	0.45	-0.3
4,950,055	-		PP_4358	0.70	-0.1
4,950,055	-		PP_4358	0.70	-2.3
4,950,055	-		PP_4358	0.70	-2.5
4,950,069	+		PP_4358	0.72	-2.5
4,950,069	+		PP_4358	0.72	+0.3
4,950,069	+		PP_4358	0.72	-2.1
4,950,070	-		PP_4358	0.72	-2.6
4,950,151	+		PP_4358	0.80	-1.2
4,950,152	-		PP_4358	0.80	-2.3
4,950,153	+		PP_4358	0.80	-4.3
4,950,154	-		PP_4358	0.80	-1.0
4,950,208	+		PP_4358	0.86	-2.2
4,950,335	+				-2.9
4,950,337	-				+2.2