Strain Fitness in Pseudomonas putida KT2440 around PP_3607

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
4,097,823	-		PP_3606	0.11	+0.6
4,097,866	+		PP_3606	0.15	+1.9
4,097,985	+		PP_3606	0.28	-0.6
4,097,986	-		PP_3606	0.28	-0.5
4,098,052	+		PP_3606	0.35	+1.3
4,098,057	+		PP_3606	0.35	+0.3
4,098,057	+		PP_3606	0.35	-0.0
4,098,178	-		PP_3606	0.47	-0.5
4,098,186	+		PP_3606	0.48	-3.1
4,098,187	-		PP_3606	0.48	-0.2
4,098,253	+		PP_3606	0.55	+0.4
4,098,253	+		PP_3606	0.55	+0.7
4,098,254	-		PP_3606	0.55	+0.2
4,098,287	-		PP_3606	0.59	-0.6
4,098,287	-		PP_3606	0.59	+0.5
4,098,304	+		PP_3606	0.60	-0.6
4,098,304	+		PP_3606	0.60	-1.3
4,098,304	+		PP_3606	0.60	+0.9
4,098,305	-		PP_3606	0.61	+0.5
4,098,305	-		PP_3606	0.61	-1.5
4,098,305	-		PP_3606	0.61	-0.8
4,098,305	-		PP_3606	0.61	-0.2
4,098,409	+		PP_3606	0.71	+0.5
4,098,409	+		PP_3606	0.71	-2.1
4,098,409	+		PP_3606	0.71	+1.0
4,098,409	+		PP_3606	0.71	-0.4
4,098,410	-		PP_3606	0.71	+0.0
4,098,410	-		PP_3606	0.71	-0.1
4,098,410	-		PP_3606	0.71	+0.2
4,098,627	+				+0.1
4,098,627	+				+0.3
4,098,628	-				+0.1
4,098,665	+				+1.7
4,098,666	-				-2.9
4,098,823	+				-0.1
4,098,823	+				+1.5
4,098,824	-				-0.1
4,098,870	-				-0.4
4,098,885	+				-0.9
4,098,914	+				+0.3
4,098,914	+				-1.3
4,098,914	+				+0.1
4,098,914	+				+0.7
4,098,914	+				+1.1
4,098,914	+				+1.3
4,098,915	-				+1.0
4,098,915	-				-0.6
4,098,915	-				-0.4
4,098,915	-				-0.5
4,098,915	-				+1.0
4,098,915	-				+1.3
4,098,915	-				-0.0
4,098,915	-				-3.4
4,098,915	-				-0.8
4,098,915	-				+1.2
4,098,919	+				-1.1
4,098,920	-				-0.0
4,098,942	+		PP_3607	0.11	-0.5
4,098,943	-		PP_3607	0.12	-1.9
4,098,943	-		PP_3607	0.12	-1.9
4,098,943	-		PP_3607	0.12	-0.5
4,098,943	-		PP_3607	0.12	+0.4
4,098,964	-		PP_3607	0.13	-1.4
4,098,981	+		PP_3607	0.15	-1.2
4,099,088	+		PP_3607	0.23	+0.3
4,099,106	+		PP_3607	0.25	-1.4
4,099,240	+		PP_3607	0.36	-0.9
4,099,240	+		PP_3607	0.36	-0.7
4,099,241	-		PP_3607	0.36	-0.9
4,099,278	+		PP_3607	0.39	-1.8
4,099,588	+		PP_3607	0.65	-1.8
4,099,816	+		PP_3607	0.83	+0.4
4,099,816	+		PP_3607	0.83	-0.3
4,099,817	-		PP_3607	0.83	-0.3
4,099,857	+		PP_3607	0.87	+0.3
4,099,857	+		PP_3607	0.87	+1.1
4,099,898	+				-1.0
4,099,898	+				+0.3
4,099,898	+				+0.6
4,099,898	+				-0.3
4,099,899	-				+2.2
4,100,038	+				-0.9
4,100,038	+				-1.2
4,100,053	+				+1.0
4,100,055	+				-0.1
4,100,055	+				-3.3
4,100,056	-				+1.7
4,100,056	-				-0.2
4,100,056	-				+0.6
4,100,056	-				-0.1
4,100,082	+				+0.8
4,100,082	+				+0.1
4,100,083	-				+2.0
4,100,089	-				-0.2
4,100,104	+				-0.9
4,100,463	+		PP_3608	0.36	-1.5
4,100,464	-		PP_3608	0.36	+0.2
4,100,737	+		PP_3608	0.66	-0.7
4,100,737	+		PP_3608	0.66	+1.8
4,100,737	+		PP_3608	0.66	-2.2
4,100,737	+		PP_3608	0.66	-0.7
4,100,737	+		PP_3608	0.66	+1.2
4,100,737	+		PP_3608	0.66	-0.1
4,100,737	+		PP_3608	0.66	+0.0
4,100,738	-		PP_3608	0.66	-0.5
4,100,738	-		PP_3608	0.66	-1.1
4,100,738	-		PP_3608	0.66	-0.2
4,100,738	-		PP_3608	0.66	-0.1
4,100,738	-		PP_3608	0.66	-0.4
4,100,738	-		PP_3608	0.66	+0.4
4,100,738	-		PP_3608	0.66	+0.4
4,100,738	-		PP_3608	0.66	-0.0
4,100,738	-		PP_3608	0.66	-1.0
4,100,810	+		PP_3608	0.73	+0.7
4,100,811	-		PP_3608	0.74	+1.7