Strain Fitness in Pseudomonas putida KT2440 around PP_3257

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
3,690,316	-		PP_3255	0.73	-1.0
3,690,316	-		PP_3255	0.73	-1.3
3,690,350	+		PP_3255	0.77	+0.4
3,690,350	+		PP_3255	0.77	-0.8
3,690,350	+		PP_3255	0.77	-0.7
3,690,351	-		PP_3255	0.77	+0.4
3,690,647	-		PP_3256	0.13	+1.2
3,690,647	-		PP_3256	0.13	+0.8
3,690,686	+		PP_3256	0.19	-0.1
3,690,687	-		PP_3256	0.19	+0.5
3,690,750	+		PP_3256	0.28	-0.4
3,690,750	+		PP_3256	0.28	+0.7
3,690,750	+		PP_3256	0.28	+1.1
3,690,751	-		PP_3256	0.28	-0.4
3,690,825	+		PP_3256	0.40	+0.6
3,690,902	-		PP_3256	0.51	-2.0
3,691,050	-		PP_3256	0.74	+0.9
3,691,100	+		PP_3256	0.81	-0.4
3,691,196	-				-0.9
3,691,269	-				+1.4
3,691,269	-				-0.5
3,691,334	-		PP_3257	0.19	-3.8
3,691,413	-		PP_3257	0.32	-0.5
3,691,469	+		PP_3257	0.42	+1.4
3,691,469	+		PP_3257	0.42	-0.9
3,691,469	+		PP_3257	0.42	-1.6
3,691,470	-		PP_3257	0.42	-0.8
3,691,470	-		PP_3257	0.42	-1.4
3,691,470	-		PP_3257	0.42	-1.5
3,691,470	-		PP_3257	0.42	-2.0
3,691,470	-		PP_3257	0.42	-0.5
3,691,470	-		PP_3257	0.42	-0.0
3,691,472	+		PP_3257	0.42	+0.6
3,691,473	-		PP_3257	0.42	+0.5
3,691,473	-		PP_3257	0.42	-0.3
3,691,691	+		PP_3257	0.79	+0.3
3,691,692	-		PP_3257	0.79	-2.5
3,691,692	-		PP_3257	0.79	-1.6
3,691,742	+		PP_3257	0.87	-0.5
3,691,784	+				+1.2
3,691,786	+				+0.3
3,691,786	+				+0.6
3,691,787	-				+0.2
3,691,787	-				+0.1
3,691,787	-				-0.4
3,691,787	-				-0.2
3,691,800	-				+0.2
3,692,046	+		PP_3258	0.29	+0.8
3,692,461	-		PP_3258	0.83	-0.3
3,692,461	-		PP_3258	0.83	+0.8
3,692,585	+				+0.8
3,692,585	+				-0.4
3,692,585	+				-0.5
3,692,586	-				-1.2
3,692,586	-				+0.1
3,692,586	-				+1.1
3,692,586	-				+1.9
3,692,586	-				-3.2
3,692,750	+		PP_3259	0.16	-0.1
3,692,750	+		PP_3259	0.16	-0.9
3,692,750	+		PP_3259	0.16	-0.2
3,692,751	-		PP_3259	0.16	-0.6
3,692,774	+		PP_3259	0.18	-1.5